Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1123
(296 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041) 44 3e-05
SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28) 27 2.1
SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.6
SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10) 26 4.7
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.7
SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.3
SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03) 26 6.3
SB_9917| Best HMM Match : Rho_N (HMM E-Value=9.4) 26 6.3
SB_49686| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 25 8.3
SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09) 25 8.3
SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.3
>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
Length = 50
Score = 43.6 bits (98), Expect = 3e-05
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +1
Query: 1 VRSSDRWKAQVIEALRRAKFKFPGRQK 81
+R+ D KA IEALRRAKFKFPGRQK
Sbjct: 24 IRTKDGNKAAAIEALRRAKFKFPGRQK 50
>SB_50550| Best HMM Match : RVT_1 (HMM E-Value=7.5e-28)
Length = 434
Score = 27.5 bits (58), Expect = 2.1
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 88 VSKKWGFTKYE---RDEFEKLREEGRLANDGCIVQYRPEHGPLDAW 216
V K W T +E + LR R D CI+ Y+ ++GPL W
Sbjct: 390 VFKDWNCTYHELLIKANLSTLRN--RRLQDICILMYKVKNGPLPIW 433
>SB_45735| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 26.6 bits (56), Expect = 3.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 225 NLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILCETPLL*Y 88
++PP E + LHN A+++ TQ L +L E L Y
Sbjct: 195 DMPPRAEEELDAVSLHNQALMNMETAPTQYYDLAADVLAENAQLTY 240
>SB_50109| Best HMM Match : Ion_trans_2 (HMM E-Value=1.4e-10)
Length = 315
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = -3
Query: 255 VRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILC 109
+RL++E + L++P + + R VLH + +S+ L LIT ++C
Sbjct: 102 MRLFLEVI-LSVPFLISNDLHRLVLHQQSALSQKVLI-----LITTVVC 144
>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 751
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 61 KFPGRQKIYVSKKWGFTKYERDEFEKL 141
K G+QK+Y K+ F+ Y+ E +K+
Sbjct: 43 KVYGKQKVYAPKQDQFSDYDEGEIKKM 69
>SB_38542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 606
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 23 RHRSSRLCAVPSSSSPDVKRSTYQRSGVSQ 112
RH+S R C ++ + R+T QR G Q
Sbjct: 91 RHQSVRTCLTELPTNQKMSRATVQRKGKEQ 120
>SB_33411| Best HMM Match : 7tm_1 (HMM E-Value=0.03)
Length = 1020
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 23 RHRSSRLCAVPSSSSPDVKRSTYQRSGVSQ---SMNVMSLRSCVKRAASLMTAALC 181
RHRSS++C + S+ +K + +G + S+ + L C+ +T+ LC
Sbjct: 8 RHRSSKVCEIYSNYPVAIKVQAFGTNGCNALVFSVALSDLGLCLLYMPVSLTSLLC 63
>SB_9917| Best HMM Match : Rho_N (HMM E-Value=9.4)
Length = 109
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +1
Query: 166 DGCIVQYRPEHGPLD 210
DGCI Q PEH LD
Sbjct: 2 DGCIAQAVPEHAKLD 16
>SB_49686| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/47 (25%), Positives = 27/47 (57%)
Frame = +2
Query: 125 MSLRSCVKRAASLMTAALCSTARNMDLSTLGGRFRLRSSMYNLTIHS 265
M+ +SC+KR ++++ +CS+ D+S L + R + + +H+
Sbjct: 616 MATKSCLKRDSNMVNPHICSSHVMHDIS-LQCKKRCNGAQFPFAMHT 661
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 229 PEPSSKRREVHVPGGTAQCSRH 164
PE + EVHVP GT++ R+
Sbjct: 503 PEVEVDQAEVHVPSGTSKTPRY 524
>SB_40744| Best HMM Match : Myosin_head (HMM E-Value=4.7e-09)
Length = 525
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 70 GRQKIYVSKKWGFTKYERDEFEKL 141
GRQ I V +GF K++ + FE+L
Sbjct: 65 GRQSIGVLDIFGFEKFDMNSFEQL 88
>SB_18608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 1 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWG 105
VR +DR K ++++AL +P + V+ K+G
Sbjct: 522 VRLTDRTKTEMLKALWDVSVSYPKGHAVLVAYKYG 556
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,850,703
Number of Sequences: 59808
Number of extensions: 164513
Number of successful extensions: 545
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 339527403
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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