Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1123
(296 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 91 1e-19
AF099913-8|ABB51194.1| 301|Caenorhabditis elegans Hypothetical ... 28 1.4
AJ249344-1|CAB77052.1| 449|Caenorhabditis elegans putative inte... 27 3.2
AF099913-1|AAC68756.1| 466|Caenorhabditis elegans Paralysed arr... 27 3.2
AF067214-6|AAC17005.2| 457|Caenorhabditis elegans Hypothetical ... 26 4.2
AC024876-12|AAF60896.2| 498|Caenorhabditis elegans Hypothetical... 26 4.2
U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 26 5.6
AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 26 5.6
Z93393-19|CAC70107.3| 971|Caenorhabditis elegans Hypothetical p... 25 7.4
Z83229-4|CAD89896.1| 971|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81077-4|CAB03071.3| 618|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z68317-4|CAA92688.1| 486|Caenorhabditis elegans Hypothetical pr... 25 7.4
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z70038-3|CAA93883.2| 541|Caenorhabditis elegans Hypothetical pr... 25 9.7
AC090999-10|AAK26141.2| 251|Caenorhabditis elegans Hypothetical... 25 9.7
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 91.1 bits (216), Expect = 1e-19
Identities = 39/61 (63%), Positives = 49/61 (80%)
Frame = +1
Query: 34 IEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDA 213
IEA RRAKFKFPGRQ I S+KWGFTK++R+++E++R EGRL +DG VQ + EHGPL
Sbjct: 149 IEAFRRAKFKFPGRQIIVSSRKWGFTKWDREDYERMRAEGRLRSDGVGVQLQREHGPLTK 208
Query: 214 W 216
W
Sbjct: 209 W 209
>AF099913-8|ABB51194.1| 301|Caenorhabditis elegans Hypothetical
protein C29F9.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 106 FTKYERDEFEKLREEGRLANDGCIVQYR 189
F K +RDEFE++R + LA + I Y+
Sbjct: 136 FFKSQRDEFERIRYDPELAEEHFIEAYK 163
>AJ249344-1|CAB77052.1| 449|Caenorhabditis elegans putative
integrin-linked kinase protein.
Length = 449
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = -3
Query: 267 VECIVRLYIEDLSLNLPPSVERSMFR 190
+EC +++ +E L +++PP + R+M R
Sbjct: 396 MECGMKIALEGLRVHIPPGIARNMNR 421
>AF099913-1|AAC68756.1| 466|Caenorhabditis elegans Paralysed arrest
at two-fold protein4 protein.
Length = 466
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/26 (34%), Positives = 19/26 (73%)
Frame = -3
Query: 267 VECIVRLYIEDLSLNLPPSVERSMFR 190
+EC +++ +E L +++PP + R+M R
Sbjct: 413 MECGMKIALEGLRVHIPPGIARNMNR 438
>AF067214-6|AAC17005.2| 457|Caenorhabditis elegans Hypothetical
protein F56C3.2 protein.
Length = 457
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 40 ALRRAKFKFPGRQKIYVSKKWGFTKYERDEFE 135
+ + AKF+FP + +S+ + Y+++EFE
Sbjct: 394 SFQEAKFQFPRIELHQISELFNLGTYQKEEFE 425
>AC024876-12|AAF60896.2| 498|Caenorhabditis elegans Hypothetical
protein Y94H6A.1 protein.
Length = 498
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 100 WGFTKYERDEFEKLREEGRL 159
+GF K +R+EFE E+G++
Sbjct: 309 YGFLKIQREEFENCPEDGQI 328
>U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox
protein 21 protein.
Length = 495
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 238 GSQPEPSSKRREVHVPGGTAQCSRH*RGGPLHAASQT 128
G+ SSK +E VPG +QC+ R P + + T
Sbjct: 171 GNSSRASSKSQEKEVPGTKSQCAPKIRTTPEQSKAAT 207
>AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein
protein.
Length = 495
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 238 GSQPEPSSKRREVHVPGGTAQCSRH*RGGPLHAASQT 128
G+ SSK +E VPG +QC+ R P + + T
Sbjct: 171 GNSSRASSKSQEKEVPGTKSQCAPKIRTTPEQSKAAT 207
>Z93393-19|CAC70107.3| 971|Caenorhabditis elegans Hypothetical
protein Y48E1B.14a protein.
Length = 971
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 173 ALCS-TARNMDLSTLGGRFRLRSSMYNLT 256
ALCS T +M S LGG FR S+ NLT
Sbjct: 843 ALCSKTIDSMICSVLGGVFRKCLSVANLT 871
>Z83229-4|CAD89896.1| 971|Caenorhabditis elegans Hypothetical
protein Y48E1B.14a protein.
Length = 971
Score = 25.4 bits (53), Expect = 7.4
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 173 ALCS-TARNMDLSTLGGRFRLRSSMYNLT 256
ALCS T +M S LGG FR S+ NLT
Sbjct: 843 ALCSKTIDSMICSVLGGVFRKCLSVANLT 871
>Z81077-4|CAB03071.3| 618|Caenorhabditis elegans Hypothetical
protein F36A2.4 protein.
Length = 618
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 34 IEALRRAKF-KFPGRQKIYVSKKWGFTKYERDEFEKLRE 147
++AL++ K K YV K W K +RD+++ + +
Sbjct: 44 LDALKKDHMAKIEQNAKDYVDKLWSVAKRDRDKYKNVED 82
>Z68317-4|CAA92688.1| 486|Caenorhabditis elegans Hypothetical
protein T01H3.4 protein.
Length = 486
Score = 25.4 bits (53), Expect = 7.4
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 67 PGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLD 210
P R + +W F +Y +FE + ND IV+ P +G D
Sbjct: 123 PERDPVVFKPQWPFPEYCASKFEAEKLVKSAPNDCYIVRCVPTYGEGD 170
>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
protein T05A7.11 protein.
Length = 1200
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 124 DEFEKLREEGRLANDGCIVQYRPEH 198
D F++LR +L N GCI + H
Sbjct: 701 DNFQELRLVNKLFNKGCIAALQKSH 725
>Z70038-3|CAA93883.2| 541|Caenorhabditis elegans Hypothetical
protein ZK1067.4 protein.
Length = 541
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 23 RHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMN 121
R SSRL ++ SSS D+K T + S + + N
Sbjct: 496 RSISSRLASISHSSSKDLKSLTLKSSSSNNNNN 528
>AC090999-10|AAK26141.2| 251|Caenorhabditis elegans Hypothetical
protein Y82E9BR.13 protein.
Length = 251
Score = 25.0 bits (52), Expect = 9.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 55 KFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGR 156
+FK PG +K+Y +K F K +E K E+ R
Sbjct: 58 EFK-PGNRKLYSNKNGAFQKTREEEMLKNFEDER 90
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,480,220
Number of Sequences: 27780
Number of extensions: 116945
Number of successful extensions: 341
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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