Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1123
         (296 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   0.60 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   5.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   9.8  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 0.60
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +2

Query: 113 SMNVMSLRSCVKRAASLMTAALCSTARNMD 202
           ++N+++   C K   ++M  A+C+ A+  D
Sbjct: 314 TLNMLTQVECYKYYGNIMVNAMCAYAKGKD 343


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 169 GCIVQYRPEHGPLDAWRKVQAEI 237
           G I  Y PE GP    +K + EI
Sbjct: 197 GAIGAYGPEKGPKVPEKKKEDEI 219


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -3

Query: 258 IVRLYIEDLSLNLPPSVERSMFR 190
           ++RL + +LS N+   ++  MF+
Sbjct: 334 LIRLIVLNLSYNMLTHIDARMFK 356


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 156 AALFTQLLKLITFILCETPLL*YVD 82
           A L    + +++F++C  PL+ + D
Sbjct: 182 ARLLVATVWILSFVICFPPLVGWKD 206


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,308
Number of Sequences: 438
Number of extensions: 1196
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6119169
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)