Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1123
(296 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 84 2e-17
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 83 3e-17
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 83 3e-17
At4g17840.1 68417.m02661 expressed protein 29 0.74
At4g13965.1 68417.m02160 F-box family protein contains F-box dom... 29 0.74
At1g07490.1 68414.m00802 expressed protein 27 1.7
At5g13030.1 68418.m01494 expressed protein contains Pfam profile... 27 2.2
At4g26370.2 68417.m03792 antitermination NusB domain-containing ... 27 2.2
At4g26370.1 68417.m03791 antitermination NusB domain-containing ... 27 2.2
At5g03800.1 68418.m00347 exostosin family protein / pentatricope... 27 3.0
At1g22470.1 68414.m02808 expressed protein 27 3.0
At3g26840.1 68416.m03357 esterase/lipase/thioesterase family pro... 26 3.9
At3g05700.1 68416.m00637 drought-responsive family protein conta... 26 3.9
At4g20760.1 68417.m03015 short-chain dehydrogenase/reductase (SD... 26 5.2
At5g45880.1 68418.m05643 pollen Ole e 1 allergen and extensin fa... 25 6.9
At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein... 25 6.9
At1g30190.1 68414.m03690 expressed protein ; expression supporte... 25 6.9
At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger) fa... 25 9.1
At3g18035.1 68416.m02292 histone H1/H5 family protein contains P... 25 9.1
At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identic... 25 9.1
At1g01760.1 68414.m00095 adenosine-deaminase family / editase fa... 25 9.1
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 83.8 bits (198), Expect = 2e-17
Identities = 40/69 (57%), Positives = 47/69 (68%)
Frame = +1
Query: 1 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIV 180
VR D EALRRAKFKFPGRQKI VS+KWGFTK+ R +F KLR+E R+ DG
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADFTKLRQEKRVVPDGVNA 197
Query: 181 QYRPEHGPL 207
++ HGPL
Sbjct: 198 KFLSCHGPL 206
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 83.0 bits (196), Expect = 3e-17
Identities = 39/69 (56%), Positives = 45/69 (65%)
Frame = +1
Query: 1 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIV 180
VR D EALRRAKFKFPGRQKI VS+KWGFTK+ R E+ KLR R+ DG
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNA 197
Query: 181 QYRPEHGPL 207
++ HGPL
Sbjct: 198 KFLSNHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 83.0 bits (196), Expect = 3e-17
Identities = 39/69 (56%), Positives = 47/69 (68%)
Frame = +1
Query: 1 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIV 180
VR D EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ KLR+E R+ DG
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRADYTKLRQEKRIVPDGVNA 197
Query: 181 QYRPEHGPL 207
++ HGPL
Sbjct: 198 KFLSCHGPL 206
>At4g17840.1 68417.m02661 expressed protein
Length = 422
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +2
Query: 2 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 160
C+ +GG SS+L P+ S D+K+ + +R+ +++ LRS +K ++S
Sbjct: 24 CSSGSGGFRSSSKLFDSPACSRSDLKKRSGKRNSRLNGLSLEKLRS-IKASSS 75
>At4g13965.1 68417.m02160 F-box family protein contains F-box domain
Pfam:PF00646
Length = 294
Score = 28.7 bits (61), Expect = 0.74
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 65 SPDVKRSTYQ-RSGVSQSMN-VMSLRSCVK-RAASLMTAALCSTARNMDLSTLGGRFRLR 235
S +VKR+ ++ V S++ ++ L C A L+ A R + L GGRF +
Sbjct: 71 SKNVKRALLSHKAPVLHSLHLIVHLHLCNSMNTAKLIGIAFACNLRKLVLEVDGGRFSIP 130
Query: 236 SSMYNLTIHSTL 271
S+YN TL
Sbjct: 131 ESLYNCETLDTL 142
>At1g07490.1 68414.m00802 expressed protein
Length = 107
Score = 27.5 bits (58), Expect = 1.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 32 SSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSL 133
SS C+VPSSSS + RS+ ++ S + SL
Sbjct: 48 SSTKCSVPSSSSSSISRSSSKKEKGSITQKYSSL 81
>At5g13030.1 68418.m01494 expressed protein contains Pfam profile
PF02696: Uncharacterized ACR, YdiU/UPF0061 family
Length = 633
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 40 ALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKL 141
A+ R KF + +SKK G TKY ++ KL
Sbjct: 455 AMERYGDKFMDEYQAIMSKKLGLTKYNKEVISKL 488
>At4g26370.2 68417.m03792 antitermination NusB domain-containing
protein contains Pfam profile: PF01029 NusB family
Length = 248
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 32 SSRLCAVPSSSSPDVKRST-YQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARN 196
SS LC S+ SPD RS + + N++SLR+ KR++S S R+
Sbjct: 13 SSNLCYFSSNVSPDSHRSIGFTLVDSLRPTNLVSLRTGNKRSSSSSLRLFLSPTRS 68
>At4g26370.1 68417.m03791 antitermination NusB domain-containing
protein contains Pfam profile: PF01029 NusB family
Length = 301
Score = 27.1 bits (57), Expect = 2.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +2
Query: 32 SSRLCAVPSSSSPDVKRST-YQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARN 196
SS LC S+ SPD RS + + N++SLR+ KR++S S R+
Sbjct: 13 SSNLCYFSSNVSPDSHRSIGFTLVDSLRPTNLVSLRTGNKRSSSSSLRLFLSPTRS 68
>At5g03800.1 68418.m00347 exostosin family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF03016 exostosin family,
PF01535 PPR repeat
Length = 1388
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = -3
Query: 240 EDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILCETP 100
ED ++P E S+ RA+L + + S ++ ++ KLI ETP
Sbjct: 680 EDTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETP 726
>At1g22470.1 68414.m02808 expressed protein
Length = 146
Score = 26.6 bits (56), Expect = 3.0
Identities = 24/82 (29%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Frame = +2
Query: 29 RSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARNMDLS 208
R+ R + S P K T +RS S N SC K + +CS N LS
Sbjct: 10 RNRRSMRTTTESKP--KNLTVKRSDSSSDYNY----SCKKHPKHRQSPGICSLCLNESLS 63
Query: 209 TLGGRF-RLRSSMYNLTIHSTL 271
L F SSM + ++ T+
Sbjct: 64 KLSSEFYDYSSSMSSSSLAKTM 85
>At3g26840.1 68416.m03357 esterase/lipase/thioesterase family
protein contains Pfam profile PF03096: Ndr family
Length = 701
Score = 26.2 bits (55), Expect = 3.9
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +2
Query: 8 LVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAA 175
L + HR + + +V S+SSP S QR + N ++ V+ S + AA
Sbjct: 24 LTSASNHRLTAIKSVTSTSSPPTPSSGVQRRRKNNDENRATVAKVVENPYSKVEAA 79
>At3g05700.1 68416.m00637 drought-responsive family protein contains
similarity to drought-induced mRNA, Di19 [Arabidopsis
thaliana] gi|469110|emb|CAA55321
Length = 181
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = +1
Query: 10 SDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREE 150
SD W ++ A RR + FP R ++ GF E D E+ REE
Sbjct: 3 SDSWSDRLASATRRYQLAFPSRSDTFL----GFE--EIDGEEEFREE 43
>At4g20760.1 68417.m03015 short-chain dehydrogenase/reductase (SDR)
family protein contains Pfam profile: PF00106 short
chain dehydrogenase
Length = 298
Score = 25.8 bits (54), Expect = 5.2
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +2
Query: 23 RHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALCSTARN-M 199
R R S L SSS P+ K G S+ + + +R ++ + A C +
Sbjct: 24 RMRVSGLATSSSSSVPNWKGGVSMVQGASRGIGLEFVRQLLENNKNGYVVATCRNPKEAT 83
Query: 200 DLSTLGGRFRLRSSMYNLTI 259
LS L RF R + L +
Sbjct: 84 SLSDLKNRFSERLFIQKLDV 103
>At5g45880.1 68418.m05643 pollen Ole e 1 allergen and extensin
family protein contains Pfam domain, PF01190: Pollen
proteins Ole e I family
Length = 174
Score = 25.4 bits (53), Expect = 6.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +1
Query: 58 FKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQY 186
F F + +S GF + D+F++ + +G + D C VQ+
Sbjct: 8 FSFFVVSAVCLSSLAGFAAADADDFDRFQIQGSVYCDTCRVQF 50
>At4g09980.1 68417.m01634 methyltransferase MT-A70 family protein
low similarity to SP|P25583 Karyogamy protein KAR4
{Saccharomyces cerevisiae},
(N6-adenosine)-methyltransferase [Mus musculus]
GI:10179948; contains Pfam profile PF05063: MT-A70
(S-adenosylmethionine-binding subunit of human mRNA:m6A
methyl-transferase (MTase))
Length = 775
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = +1
Query: 115 YERDEFEKLREEGRLANDGCIVQYRPEHGPLDAWRK 222
YE++++ + E R +DG + R + G D W++
Sbjct: 190 YEKEKYSRKDERSRGRDDGWSDRDRDQEGLKDNWKR 225
>At1g30190.1 68414.m03690 expressed protein ; expression supported
by MPSS
Length = 278
Score = 25.4 bits (53), Expect = 6.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 88 VSKKWGFTKYERDEFEKLREE 150
+ +KW + K E +EF KL E
Sbjct: 231 IPEKWEYVKEESEEFSKLSNE 251
>At3g43430.1 68416.m04597 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 167
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 23 RHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMT--AALC 181
R RSS + SSSSP + T + +S+ V + R V+R+ + + A+C
Sbjct: 37 RSRSSSSSSSQSSSSPSISSQT-----IKESLAVSAFRDAVERSPAAINDMCAVC 86
>At3g18035.1 68416.m02292 histone H1/H5 family protein contains Pfam
domain, PF00538: linker histone H1 and H5 family;similar
to HMG I/Y like protein (GI:15706274) [Glycine
max];similar to HMR1 protein (GI:4218141) [Antirrhinum
majus]; similar to high mobility group protein
(GI:1483173) [Canavalia gladiata]
Length = 480
Score = 25.0 bits (52), Expect = 9.1
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -2
Query: 145 HAASQTHHVHTL*NP--TSLIRRSFDVRGT*T 56
HAA THH+ TL S++++S+ + G+ T
Sbjct: 105 HAALLTHHLKTLKTSGVLSMVKKSYKIAGSST 136
>At1g21270.1 68414.m02658 wall-associated kinase 2 (WAK2) identical
to wall-associated kinase 2 [Arabidopsis thaliana]
GI:4826399; induced by salicylic acid or INA
(PMID:10380805)
Length = 732
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 39 GSAPCQVQVPRTSKDLRIKEVGFH 110
G CQ+ VPR +R+K FH
Sbjct: 159 GEGCCQIPVPRGYSFVRVKPHSFH 182
>At1g01760.1 68414.m00095 adenosine-deaminase family / editase
family similar to double-stranded RNA-specific editase
GB:AAF69673 GI:7770275 from [Danio rerio]
Length = 325
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 273 LRVECIVRLYIEDLSLNLPPSVERSM 196
L+ C++ LYI L NLP ++ S+
Sbjct: 115 LKSGCLLHLYISQLPCNLPSILDDSL 140
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,123,157
Number of Sequences: 28952
Number of extensions: 109007
Number of successful extensions: 314
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 281229760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -