Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1122
         (560 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0174 - 6202334-6204922                                           29   3.4  
05_02_0057 - 6203009-6203054,6203331-6203545                           28   4.4  
03_05_0394 + 23758392-23758625,23759097-23759273,23759349-237594...    27   7.7  

>10_02_0174 - 6202334-6204922
          Length = 862

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 259 WGDGQ-KSLFHNPHVNALPSGYEDDH*ITII 348
           +GDG   S+ +NPH+ A   GY+ D  ++II
Sbjct: 373 FGDGMANSVMYNPHLVARQFGYDQDFPVSII 403


>05_02_0057 - 6203009-6203054,6203331-6203545
          Length = 86

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 315 AGKGIHMRVV--EKGLLSITPWERFVRMR 235
           A  G+H  VV  E+G+  + PWER +R R
Sbjct: 44  ASGGLHATVVTMEEGIRCLRPWERRIRRR 72


>03_05_0394 +
           23758392-23758625,23759097-23759273,23759349-23759453,
           23759640-23759681,23759763-23759960,23760037-23760165,
           23760248-23760377,23761119-23761179,23761241-23761322,
           23761402-23761653
          Length = 469

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 179 LAHQEEHHERPPFVPYEYMRIRTKRSHGVMDRS 277
           L H E+H  R  ++  EY  I  KR  GV  R+
Sbjct: 139 LTHGEQHFPRKRYIKVEYPTIIGKRVRGVNGRA 171


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,584,789
Number of Sequences: 37544
Number of extensions: 250139
Number of successful extensions: 528
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 528
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)