Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1122
         (560 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6100| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.040
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  28   4.5  
SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)                   27   7.9  
SB_54058| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_43215| Best HMM Match : ResIII (HMM E-Value=7.9)                    27   7.9  

>SB_6100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 35.1 bits (77), Expect = 0.040
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +1

Query: 253 FPWGDGQKSLFHNPHVN 303
           FPWGDG   LFHN H N
Sbjct: 2   FPWGDGDPPLFHNKHTN 18


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 447  NFNPIKRRKKIAIFLTFNNLKYMNVLQTNFLKQNYCNLV 331
            +F  I+ RKK+ +F+  N L     LQ + L  ++C+ +
Sbjct: 1034 SFVAIEHRKKVCLFMALNKLNNDVTLQGSNLSLSFCDSI 1072


>SB_19079| Best HMM Match : LCM (HMM E-Value=6.3e-37)
          Length = 420

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 271 QKSLFHNPHVNALPSGYEDD 330
           Q +LF+ PH N LPSG+  +
Sbjct: 131 QNNLFNIPHENELPSGFHSE 150


>SB_54058| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 116 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFV 220
           WK +  F    A+ +     YL  +E H  +PPFV
Sbjct: 13  WKFLDVFRKEIAVTVFQSRHYLEFEEAHQTQPPFV 47


>SB_43215| Best HMM Match : ResIII (HMM E-Value=7.9)
          Length = 235

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -2

Query: 295 EGCGKGTSVHHPMGTLCTNA 236
           E CGK  S HH +G   TNA
Sbjct: 150 EDCGKRRSTHHSLGGWITNA 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,583,995
Number of Sequences: 59808
Number of extensions: 301358
Number of successful extensions: 643
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)