Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1122
(560 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF020589-1|AAC98895.1| 86|Homo sapiens cytochrome C oxidase su... 64 3e-10
X15341-1|CAA33392.1| 86|Homo sapiens protein ( Human COX VIa-L... 62 2e-09
U83702-1|AAD00554.1| 86|Homo sapiens cytochrome c oxidase subu... 62 2e-09
BC107861-1|AAI07862.1| 109|Homo sapiens cytochrome c oxidase su... 62 2e-09
BC070186-1|AAH70186.1| 109|Homo sapiens cytochrome c oxidase su... 62 2e-09
BC007723-1|AAH07723.1| 109|Homo sapiens cytochrome c oxidase su... 62 2e-09
AL160264-2|CAI20472.1| 109|Homo sapiens protein ( Human DNA seq... 62 2e-09
AL021546-1|CAA16494.1| 109|Homo sapiens cytochrome c oxidase su... 62 2e-09
U66875-1|AAC51328.1| 97|Homo sapiens cytochrome oxidase subuni... 50 7e-06
M83308-1|AAA52062.1| 97|Homo sapiens cytochrome c oxidase subu... 50 7e-06
BC029818-1|AAH29818.1| 97|Homo sapiens cytochrome c oxidase su... 50 7e-06
>AF020589-1|AAC98895.1| 86|Homo sapiens cytochrome C oxidase
subunit VIa homolog protein.
Length = 86
Score = 64.1 bits (149), Expect = 3e-10
Identities = 24/46 (52%), Positives = 34/46 (73%)
Frame = +2
Query: 113 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTK 250
+WK +++FVA P + + MLN +L + E HERPPFV Y ++RIRTK
Sbjct: 14 MWKALTYFVALPGVGVSMLNVFLKSRHEEHERPPFVAYPHLRIRTK 59
Score = 57.2 bits (132), Expect = 4e-08
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 247 KAFPWGDGQKSLFHNPHVNALPSGYEDD 330
K FPWGDG +LFHNPHVN LP+GYED+
Sbjct: 59 KPFPWGDGNHTLFHNPHVNPLPTGYEDE 86
>X15341-1|CAA33392.1| 86|Homo sapiens protein ( Human COX VIa-L
mRNA for cytochrome c oxidase liver-specific subunitVIa
(EC 1.9.3.1). ).
Length = 86
Score = 61.7 bits (143), Expect = 2e-09
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = +2
Query: 113 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTK 250
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK
Sbjct: 14 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTK 59
Score = 57.2 bits (132), Expect = 4e-08
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 247 KAFPWGDGQKSLFHNPHVNALPSGYEDD 330
K FPWGDG +LFHNPHVN LP+GYED+
Sbjct: 59 KPFPWGDGNHTLFHNPHVNPLPTGYEDE 86
>U83702-1|AAD00554.1| 86|Homo sapiens cytochrome c oxidase subunit
VIa protein.
Length = 86
Score = 61.7 bits (143), Expect = 2e-09
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = +2
Query: 113 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTK 250
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK
Sbjct: 14 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTK 59
Score = 57.2 bits (132), Expect = 4e-08
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 247 KAFPWGDGQKSLFHNPHVNALPSGYEDD 330
K FPWGDG +LFHNPHVN LP+GYED+
Sbjct: 59 KPFPWGDGNHTLFHNPHVNPLPTGYEDE 86
>BC107861-1|AAI07862.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 61.7 bits (143), Expect = 2e-09
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = +2
Query: 113 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTK 250
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTK 82
Score = 57.2 bits (132), Expect = 4e-08
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 247 KAFPWGDGQKSLFHNPHVNALPSGYEDD 330
K FPWGDG +LFHNPHVN LP+GYED+
Sbjct: 82 KPFPWGDGNHTLFHNPHVNPLPTGYEDE 109
>BC070186-1|AAH70186.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 61.7 bits (143), Expect = 2e-09
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = +2
Query: 113 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTK 250
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTK 82
Score = 57.2 bits (132), Expect = 4e-08
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 247 KAFPWGDGQKSLFHNPHVNALPSGYEDD 330
K FPWGDG +LFHNPHVN LP+GYED+
Sbjct: 82 KPFPWGDGNHTLFHNPHVNPLPTGYEDE 109
>BC007723-1|AAH07723.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 61.7 bits (143), Expect = 2e-09
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = +2
Query: 113 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTK 250
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTK 82
Score = 57.2 bits (132), Expect = 4e-08
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 247 KAFPWGDGQKSLFHNPHVNALPSGYEDD 330
K FPWGDG +LFHNPHVN LP+GYED+
Sbjct: 82 KPFPWGDGNHTLFHNPHVNPLPTGYEDE 109
>AL160264-2|CAI20472.1| 109|Homo sapiens protein ( Human DNA
sequence from clone RP3-405J24 on chromosome 6 Contains
the FDG2 gene for FGD1 family member 2, the gene for a
novel protein ).
Length = 109
Score = 61.7 bits (143), Expect = 2e-09
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = +2
Query: 113 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTK 250
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTK 82
Score = 57.2 bits (132), Expect = 4e-08
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 247 KAFPWGDGQKSLFHNPHVNALPSGYEDD 330
K FPWGDG +LFHNPHVN LP+GYED+
Sbjct: 82 KPFPWGDGNHTLFHNPHVNPLPTGYEDE 109
>AL021546-1|CAA16494.1| 109|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 1 protein.
Length = 109
Score = 61.7 bits (143), Expect = 2e-09
Identities = 24/46 (52%), Positives = 32/46 (69%)
Frame = +2
Query: 113 LWKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTK 250
+WK ++FFVA P +A+ MLN YL HERP F+ Y ++RIRTK
Sbjct: 37 MWKTLTFFVALPGVAVSMLNVYLKSHHGEHERPEFIAYPHLRIRTK 82
Score = 57.2 bits (132), Expect = 4e-08
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +1
Query: 247 KAFPWGDGQKSLFHNPHVNALPSGYEDD 330
K FPWGDG +LFHNPHVN LP+GYED+
Sbjct: 82 KPFPWGDGNHTLFHNPHVNPLPTGYEDE 109
>U66875-1|AAC51328.1| 97|Homo sapiens cytochrome oxidase subunit
VIa heart isoform precursor protein.
Length = 97
Score = 49.6 bits (113), Expect = 7e-06
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 247 KAFPWGDGQKSLFHNPHVNALPSGYE 324
K +PWGDG +LFHN HVN LP+GYE
Sbjct: 70 KPYPWGDGNHTLFHNSHVNPLPTGYE 95
Score = 47.2 bits (107), Expect = 4e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +2
Query: 116 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTK 250
W+ ++F +A P++AL N+YL H RP F PY+++RIRTK
Sbjct: 28 WRLLTFVLALPSVALCTFNSYL--HSGHRPRPEFRPYQHLRIRTK 70
>M83308-1|AAA52062.1| 97|Homo sapiens cytochrome c oxidase subunit
VIa protein.
Length = 97
Score = 49.6 bits (113), Expect = 7e-06
Identities = 21/45 (46%), Positives = 31/45 (68%)
Frame = +2
Query: 116 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTK 250
W+ ++F +A P++AL N+YL H ERP F PY+++RIRTK
Sbjct: 28 WRLLTFVLALPSVALCTFNSYL--HSGHRERPEFRPYQHLRIRTK 70
Score = 49.6 bits (113), Expect = 7e-06
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 247 KAFPWGDGQKSLFHNPHVNALPSGYE 324
K +PWGDG +LFHN HVN LP+GYE
Sbjct: 70 KPYPWGDGNHTLFHNSHVNPLPTGYE 95
>BC029818-1|AAH29818.1| 97|Homo sapiens cytochrome c oxidase
subunit VIa polypeptide 2 protein.
Length = 97
Score = 49.6 bits (113), Expect = 7e-06
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = +1
Query: 247 KAFPWGDGQKSLFHNPHVNALPSGYE 324
K +PWGDG +LFHN HVN LP+GYE
Sbjct: 70 KPYPWGDGNHTLFHNSHVNPLPTGYE 95
Score = 47.2 bits (107), Expect = 4e-05
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +2
Query: 116 WKRMSFFVAFPAIALGMLNAYLAHQEEHHERPPFVPYEYMRIRTK 250
W+ ++F +A P++AL N+YL H RP F PY+++RIRTK
Sbjct: 28 WRLLTFVLALPSVALCTFNSYL--HSGHRPRPEFRPYQHLRIRTK 70
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,819,961
Number of Sequences: 237096
Number of extensions: 1468777
Number of successful extensions: 2545
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2542
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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