Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1122
         (560 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily ass...    34   0.061
Z81093-2|CAB03146.1|  545|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associa...    28   5.3  
AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.        28   5.3  

>U12966-3|AAA20614.1|  128|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 174 protein.
          Length = 128

 Score = 34.3 bits (75), Expect = 0.061
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 247 KAFPWGDGQKSLFHNPHVNALPS-GYEDD 330
           K FPW DG  SLFHN     +P  G+E D
Sbjct: 96  KPFPWSDGNHSLFHNKAEQFVPGVGFEAD 124


>Z81093-2|CAB03146.1|  545|Caenorhabditis elegans Hypothetical
           protein F58D2.1 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/37 (27%), Positives = 24/37 (64%)
 Frame = -3

Query: 438 PIKRRKKIAIFLTFNNLKYMNVLQTNFLKQNYCNLVV 328
           PIK  ++++     NNLK +++ +T F++++  N ++
Sbjct: 150 PIKSCEELSDLFNLNNLKAVDISETRFIRESNNNTIM 186


>U28991-1|AAM22059.1|  696|Caenorhabditis elegans Kinesin-associated
           protein protein1, isoform a protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 328 HLHNRWEGHSHEGCGKGTSVHHPMGTLCTNA 236
           ++ N +   S   C  G  +HH +GTLC NA
Sbjct: 174 NIMNLFVNISKFSCLHGILLHHKIGTLCVNA 204


>AF149287-1|AAF99086.1|  696|Caenorhabditis elegans KAP protein.
          Length = 696

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 328 HLHNRWEGHSHEGCGKGTSVHHPMGTLCTNA 236
           ++ N +   S   C  G  +HH +GTLC NA
Sbjct: 174 NIMNLFVNISKFSCLHGILLHHKIGTLCVNA 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,231,410
Number of Sequences: 27780
Number of extensions: 229307
Number of successful extensions: 558
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)