Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1122
         (560 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16745.1 68417.m02529 exostosin family protein contains Pfam ...    29   2.8  
At3g58810.2 68416.m06555 zinc transporter, putative similar to z...    29   2.8  
At3g58810.1 68416.m06554 zinc transporter, putative similar to z...    29   2.8  

>At4g16745.1 68417.m02529 exostosin family protein contains Pfam
           PF03016: Exostosin family
          Length = 542

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 247 KAFPWGDGQKSLFHNPHVNAL 309
           K + + DG K +FH PH+N +
Sbjct: 201 KVYIYPDGDKPIFHEPHLNGI 221


>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
           transporter 4; ZnT4 [Mus musculus]
           gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
           [Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
           the cation diffusion facilitator (CDF) family, or cation
           efflux (CE) family, PMID:11500563
          Length = 393

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 331 GHLHNRWEGHSHEGCGKGTSVHHPMGTLCTNAH 233
           GH H    GHSH+  G G S  H  G   T  H
Sbjct: 197 GHDHGHGHGHSHDN-GHGHSHDHGHGIAATEHH 228


>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
           transporter 4; ZnT4 [Mus musculus]
           gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
           [Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
           the cation diffusion facilitator (CDF) family, or cation
           efflux (CE) family, PMID:11500563
          Length = 432

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = -2

Query: 331 GHLHNRWEGHSHEGCGKGTSVHHPMGTLCTNAH 233
           GH H    GHSH+  G G S  H  G   T  H
Sbjct: 236 GHDHGHGHGHSHDN-GHGHSHDHGHGIAATEHH 267


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,371,879
Number of Sequences: 28952
Number of extensions: 205091
Number of successful extensions: 423
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)