Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1120
(758 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016664-11|AAK72083.1| 204|Caenorhabditis elegans Hypothetical... 47 1e-05
Z78536-2|CAB01716.1| 363|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z49887-5|CAE17773.1| 184|Caenorhabditis elegans Hypothetical pr... 43 2e-04
U42839-2|AAC69015.1| 425|Caenorhabditis elegans Venom-allergen-... 42 5e-04
U42839-1|AAM54195.1| 424|Caenorhabditis elegans Venom-allergen-... 42 5e-04
AF112356-1|AAD27559.1| 425|Caenorhabditis elegans venom allerge... 42 5e-04
Z74037-3|CAA98491.1| 289|Caenorhabditis elegans Hypothetical pr... 42 6e-04
Z68108-4|CAA92136.1| 246|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical pr... 40 0.003
Z78536-1|CAB01715.2| 417|Caenorhabditis elegans Hypothetical pr... 38 0.006
Z70307-5|CAA94331.1| 209|Caenorhabditis elegans Hypothetical pr... 38 0.008
Z70308-5|CAA94348.1| 207|Caenorhabditis elegans Hypothetical pr... 36 0.041
Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical pr... 35 0.055
U23514-11|AAM48531.1| 287|Caenorhabditis elegans Long protein 1... 34 0.13
U23514-10|AAK95879.1| 301|Caenorhabditis elegans Long protein 1... 34 0.13
U23514-9|AAC46538.1| 312|Caenorhabditis elegans Long protein 1,... 34 0.13
Z73911-1|CAA98140.1| 262|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z70307-2|CAA94335.1| 208|Caenorhabditis elegans Hypothetical pr... 33 0.29
Z73896-3|CAA98060.1| 208|Caenorhabditis elegans Hypothetical pr... 31 0.67
AF078781-1|AAC26915.2| 258|Caenorhabditis elegans Hypothetical ... 31 0.89
AF016661-5|AAB66052.1| 207|Caenorhabditis elegans Hypothetical ... 30 1.6
Z82092-1|CAB05010.1| 196|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70312-2|CAA94386.2| 396|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z70308-6|CAA94344.1| 207|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear recep... 29 2.7
AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormo... 29 2.7
Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical pr... 29 4.7
AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein... 29 4.7
Z81527-1|CAB04269.3| 290|Caenorhabditis elegans Hypothetical pr... 28 6.3
AC006627-4|AAK85459.1| 712|Caenorhabditis elegans Hypothetical ... 28 6.3
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr... 28 8.3
AF098995-3|AAC67483.1| 276|Caenorhabditis elegans F-box b prote... 28 8.3
AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical ... 28 8.3
AC006717-1|AAY55883.2| 101|Caenorhabditis elegans Hypothetical ... 28 8.3
>AF016664-11|AAK72083.1| 204|Caenorhabditis elegans Hypothetical
protein D2062.1 protein.
Length = 204
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Frame = +1
Query: 73 HNEYRREHGVSPLVINKEISKISQKWAEELAKRDSLAYSLNQRYGESV--YC--GWSPDP 240
HN YR +HG PLV + + +++WA+E+AK +++ ++YGE+V +C G P P
Sbjct: 55 HNLYRSKHGAPPLVADPVMDVAAKRWADEMAKSGWISHEKPRKYGENVAMFCQSGCWPLP 114
Query: 241 NT 246
T
Sbjct: 115 QT 116
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Frame = +3
Query: 312 EPEVLN-CGHFTQIIWRSTSELGIGSAKSKTGK------LYVVANYYPPGNY--SGLFVK 464
+PE+L GHFTQI+W+S+ ++G+G + K+ + ++ + PPGN ++
Sbjct: 138 KPELLKENGHFTQIVWKSSRKIGVGISIGKSSQPPYIPTMFHCVKFDPPGNVLAQQYYLS 197
Query: 465 NVLPPGA 485
NV P A
Sbjct: 198 NVQRPTA 204
>Z78536-2|CAB01716.1| 363|Caenorhabditis elegans Hypothetical
protein C07A4.3 protein.
Length = 363
Score = 45.6 bits (103), Expect = 4e-05
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Frame = +3
Query: 333 GHFTQIIWRSTSELGIGSAKSKTGKL---YVVANYYPPGNY--SGLFVKNVLPP 479
GHFTQ++W+++ ++G+G + +K G + YV Y PPGN S ++ NV P
Sbjct: 299 GHFTQLLWKNSRKIGVGVSVAKRGTMYHVYVCIKYDPPGNMQTSEAYMDNVRAP 352
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/58 (25%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Frame = +1
Query: 46 DFENEALEVHNEYRREHGVSPLVINKEISKISQKWAEELA-KRDSLAYSLNQRYGESV 216
D + + HN+YR H + ++ ++ ++QKW++E+A + L + +YGE++
Sbjct: 199 DLKKWIVHFHNKYRAHHSSPAVTVDSNLTNLAQKWSDEMAFHKKCLVHEQPSKYGENL 256
>Z49887-5|CAE17773.1| 184|Caenorhabditis elegans Hypothetical
protein F09B9.5 protein.
Length = 184
Score = 43.2 bits (97), Expect = 2e-04
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +3
Query: 255 ARDCVDKWYSEINEFSFGKEPEVLNCGHFTQIIWRSTSELGIGSA 389
A V+ WY E ++ + +FTQ+IWRST E+G+G A
Sbjct: 74 AESVVEHWYQEHEKYEYETPGWQTGTNYFTQVIWRSTKEIGVGCA 118
Score = 42.7 bits (96), Expect = 3e-04
Identities = 18/57 (31%), Positives = 37/57 (64%)
Frame = +1
Query: 46 DFENEALEVHNEYRREHGVSPLVINKEISKISQKWAEELAKRDSLAYSLNQRYGESV 216
+F ++ L HN R+ H L ++E+S+++Q+WA++LAK+ +++S GE++
Sbjct: 9 EFVDQMLLEHNTRRKMHSAPNLECSEELSEMAQQWADKLAKQAHISFSELSGIGENI 65
>U42839-2|AAC69015.1| 425|Caenorhabditis elegans
Venom-allergen-like protein protein1, isoform a protein.
Length = 425
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +3
Query: 255 ARDCVDKWYSEINEFSFGKEPEVLNC------GHFTQIIWRSTSELGIGSAKSKTGKLYV 416
A D W+SE+ +F G + + GH+TQ+ W T+E+G T Y
Sbjct: 323 AEDSSKAWWSELKDFGVGSDNILTQAVFDRGVGHYTQMAWEGTTEIGCFVENCPT-FTYS 381
Query: 417 VANYYPPGNY 446
V Y P GNY
Sbjct: 382 VCQYGPAGNY 391
>U42839-1|AAM54195.1| 424|Caenorhabditis elegans
Venom-allergen-like protein protein1, isoform b protein.
Length = 424
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +3
Query: 255 ARDCVDKWYSEINEFSFGKEPEVLNC------GHFTQIIWRSTSELGIGSAKSKTGKLYV 416
A D W+SE+ +F G + + GH+TQ+ W T+E+G T Y
Sbjct: 322 AEDSSKAWWSELKDFGVGSDNILTQAVFDRGVGHYTQMAWEGTTEIGCFVENCPT-FTYS 380
Query: 417 VANYYPPGNY 446
V Y P GNY
Sbjct: 381 VCQYGPAGNY 390
>AF112356-1|AAD27559.1| 425|Caenorhabditis elegans venom
allergen-like protein protein.
Length = 425
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Frame = +3
Query: 255 ARDCVDKWYSEINEFSFGKEPEVLNC------GHFTQIIWRSTSELGIGSAKSKTGKLYV 416
A D W+SE+ +F G + + GH+TQ+ W T+E+G T Y
Sbjct: 323 AEDSSKAWWSELKDFGVGSDNILTQAVFDRGVGHYTQMAWEGTTEIGCFVENCPT-FTYS 381
Query: 417 VANYYPPGNY 446
V Y P GNY
Sbjct: 382 VCQYGPAGNY 391
>Z74037-3|CAA98491.1| 289|Caenorhabditis elegans Hypothetical
protein F57B7.2 protein.
Length = 289
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Frame = +3
Query: 258 RDCVDKWYSEINEFSFGKEPEVLNCGHFTQIIWRSTSELGIGSAKSKTGKLYVVANYYPP 437
++ + +W E F F K C F+Q++W+ T+ELG + V +Y P
Sbjct: 183 QEVIQEWEKEAQFFDFDKPRWNPKCQRFSQVVWKDTTELGAARYWNTANNCVAVVCFYRP 242
Query: 438 ---GNYSGLFVKNV 470
N G F NV
Sbjct: 243 AGNSNAPGEFASNV 256
Score = 37.9 bits (84), Expect = 0.008
Identities = 17/57 (29%), Positives = 32/57 (56%)
Frame = +1
Query: 46 DFENEALEVHNEYRREHGVSPLVINKEISKISQKWAEELAKRDSLAYSLNQRYGESV 216
+F+ L+ HNE R+ +G L + E+++++ WA +LA R + Y GE++
Sbjct: 112 NFQRSCLDAHNECRQRYGNENLCWSTELAEMAHAWAVKLADRGRVLYPELPGIGENL 168
>Z68108-4|CAA92136.1| 246|Caenorhabditis elegans Hypothetical
protein T05A10.5 protein.
Length = 246
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Frame = +3
Query: 237 PKYKDQARDCVDKWYSEINEFSFGKE----PEVLNC-----GHFTQIIWRSTSELGIGSA 389
P + V+KW+ E+ EF + PE+ + GH+TQ+ W T LG G A
Sbjct: 134 PDPRSLIHTAVEKWWQELEEFGTPIDNVLTPELWDLKGKAIGHYTQMAWDRTYRLGCGIA 193
Query: 390 KSKTGKLYVVANYYPPGN 443
YVV +Y P GN
Sbjct: 194 NCPK-MSYVVCHYGPAGN 210
>Z70308-2|CAA94349.1| 212|Caenorhabditis elegans Hypothetical
protein F49E11.5 protein.
Length = 212
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = +3
Query: 276 WYSEINEFSFGKE---PEVLNCG--HFTQIIWRSTSELGIGSAKSKT---GKLYVVANYY 431
W SE F + E+ N G H TQ+ W +T+++G G +K + G YVV Y
Sbjct: 118 WESEFQRFGWNGNLLTEELFNSGIGHATQMAWATTNKIGCGISKCSSDSFGTQYVVVCLY 177
Query: 432 -PPGNYSGL 455
P GNY G+
Sbjct: 178 SPAGNYIGM 186
>Z78536-1|CAB01715.2| 417|Caenorhabditis elegans Hypothetical
protein C07A4.2 protein.
Length = 417
Score = 38.3 bits (85), Expect = 0.006
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 73 HNEYRREHGVSPLVINKEISKISQKWAEELA-KRDSLAYSLNQRYGESVY 219
HN YR +HG L+ + + ++WA+ELA + L + + YGE+++
Sbjct: 260 HNVYRSKHGAPALISDSVLDSRGKRWADELAYHKGCLVHEQPRTYGENLF 309
Score = 34.7 bits (76), Expect = 0.072
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 16/67 (23%)
Frame = +3
Query: 333 GHFTQIIWRSTSELGIGSAKSKTGK--------------LYVVANYYPPGNYSG--LFVK 464
GHFTQ+IW+++ ++G+G + K+ +YVV Y P GN+ ++
Sbjct: 351 GHFTQLIWKNSRKIGVGVSIVKSSSIRSPCVSSSPNMYFIYVVVKYDPAGNFESHKAYLN 410
Query: 465 NVLPPGA 485
NV P A
Sbjct: 411 NVERPVA 417
>Z70307-5|CAA94331.1| 209|Caenorhabditis elegans Hypothetical
protein C39E9.5 protein.
Length = 209
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/88 (31%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Frame = +3
Query: 258 RDCVDKWYSEINEFSFGKEPEVL-----NCGHFTQIIWRSTSELGIG-------SAKSKT 401
+ VD W SE F + GH TQ+ W +T ++G G S + +
Sbjct: 106 QSAVDTWVSEFQMFGWNSNKFTTALWNTGIGHATQVAWSATGQVGCGAKNCGADSVRVGS 165
Query: 402 GKLYVVANYYPPGNYSGLFVKNVLPPGA 485
K +V Y PGNY LF KN+ GA
Sbjct: 166 YKATIVCQYKVPGNY--LF-KNIYNSGA 190
>Z70308-5|CAA94348.1| 207|Caenorhabditis elegans Hypothetical
protein F49E11.9 protein.
Length = 207
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Frame = +3
Query: 333 GHFTQIIWRSTSELGIG-------SAKSKTGKLYVVANYYPPGNYSG 452
GH TQ+ W +TS +G G ++ K+ VV Y PPGN G
Sbjct: 134 GHATQMAWANTSSIGCGVKNCGRDASMRNMNKIAVVCQYSPPGNTMG 180
>Z70308-1|CAA94351.1| 213|Caenorhabditis elegans Hypothetical
protein F49E11.4 protein.
Length = 213
Score = 35.1 bits (77), Expect = 0.055
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 9/69 (13%)
Frame = +3
Query: 273 KWYSEI-----NEFSFGKEPEVLNCGHFTQIIWRSTSELGIGSAKSKTG----KLYVVAN 425
KW++E + + + GH Q+ W +TS++G G +K G + VV
Sbjct: 112 KWWNEFETNGWDSLIYNHASQRFQIGHAVQMAWHTTSKVGCGYSKCAVGTPEQTMVVVCR 171
Query: 426 YYPPGNYSG 452
Y+ GN G
Sbjct: 172 YFQKGNIEG 180
>U23514-11|AAM48531.1| 287|Caenorhabditis elegans Long protein 1,
isoform c protein.
Length = 287
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 261 DCVDKWYSEINEFSFGKEPEVLNC-GHFTQIIWRSTSELGIGSAKSK 398
D + W++E++ G +C GH+ Q++W T+ +G G ++ +
Sbjct: 145 DAISIWFNEVHNPRCGCNHAYKHCCGHYVQVVWAKTNLVGCGFSRCR 191
>U23514-10|AAK95879.1| 301|Caenorhabditis elegans Long protein 1,
isoform b protein.
Length = 301
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 261 DCVDKWYSEINEFSFGKEPEVLNC-GHFTQIIWRSTSELGIGSAKSK 398
D + W++E++ G +C GH+ Q++W T+ +G G ++ +
Sbjct: 145 DAISIWFNEVHNPRCGCNHAYKHCCGHYVQVVWAKTNLVGCGFSRCR 191
>U23514-9|AAC46538.1| 312|Caenorhabditis elegans Long protein 1,
isoform a protein.
Length = 312
Score = 33.9 bits (74), Expect = 0.13
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 261 DCVDKWYSEINEFSFGKEPEVLNC-GHFTQIIWRSTSELGIGSAKSK 398
D + W++E++ G +C GH+ Q++W T+ +G G ++ +
Sbjct: 145 DAISIWFNEVHNPRCGCNHAYKHCCGHYVQVVWAKTNLVGCGFSRCR 191
>Z73911-1|CAA98140.1| 262|Caenorhabditis elegans Hypothetical
protein T12A7.3 protein.
Length = 262
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Frame = +3
Query: 333 GHFTQIIWRSTSELGIGSAKSK-----TG----KLYVVANYYPPGNY 446
GH TQ++W T ++G + K TG K+ VV +Y+P GNY
Sbjct: 188 GHATQMVWADTYQMGCAVSHFKEIHKRTGRPITKICVVCHYWPKGNY 234
>Z70307-2|CAA94335.1| 208|Caenorhabditis elegans Hypothetical
protein C39E9.2 protein.
Length = 208
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +3
Query: 333 GHFTQIIWRSTSELGIG---SAKSKTG--KLYVVANYYPPGNY 446
GH TQ+ W T+ +G G K G K+ VV Y P GNY
Sbjct: 137 GHATQMAWAKTNLIGCGVKNCGKDTNGFNKVTVVCQYKPQGNY 179
>Z73896-3|CAA98060.1| 208|Caenorhabditis elegans Hypothetical
protein F09E8.5 protein.
Length = 208
Score = 31.5 bits (68), Expect = 0.67
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Frame = +3
Query: 333 GHFTQIIWRSTSELGIGSAK-----SKTGKLYVVANYYPPGNY 446
GH TQ+ W T+ +G G + K+ VV +Y P GNY
Sbjct: 137 GHATQMAWAKTNLIGCGVKNCGMDTNGMNKVAVVCHYQPQGNY 179
>AF078781-1|AAC26915.2| 258|Caenorhabditis elegans Hypothetical
protein B0545.3 protein.
Length = 258
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 9/46 (19%)
Frame = +3
Query: 333 GHFTQIIWRSTSELGIGSAK-------SKTGKLYVVA--NYYPPGN 443
GH TQI+W+ T +LG + S G+ Y VA YYP GN
Sbjct: 168 GHATQILWKETRKLGCAVQECPARQDGSLDGQKYNVAVCKYYPTGN 213
>AF016661-5|AAB66052.1| 207|Caenorhabditis elegans Hypothetical
protein F02E11.5 protein.
Length = 207
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +3
Query: 333 GHFTQIIWRSTSELG-----IGSAKSKTGKLYVVANYYPPGN 443
GH TQ+ W ST +G G K+K K+ VV Y GN
Sbjct: 136 GHATQMAWASTGSIGCGVKNCGMDKNKMYKVAVVCQYSARGN 177
>Z82092-1|CAB05010.1| 196|Caenorhabditis elegans Hypothetical
protein ZK384.1 protein.
Length = 196
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 342 TQIIWRSTSELGIGSAKSKTGKLYVVANYYPPGNYSGLFVKNVLPP 479
+Q++W T +G G + + VV YY GN G + PP
Sbjct: 126 SQMVWAGTKYVGCGVKRCDPINVVVVCMYYQQGNLVGRPIYKEGPP 171
>Z70312-2|CAA94386.2| 396|Caenorhabditis elegans Hypothetical
protein ZC168.3 protein.
Length = 396
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = -3
Query: 570 LGDILFGEGGAKLLFDSL 517
LGD L+ +G KLLFDSL
Sbjct: 52 LGDFLYADGSLKLLFDSL 69
>Z70308-6|CAA94344.1| 207|Caenorhabditis elegans Hypothetical
protein F49E11.10 protein.
Length = 207
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = +3
Query: 333 GHFTQIIWRSTSELGIG---SAKSKTG--KLYVVANYYPPGNYSGLFV 461
GH TQ+ W ++ +G G + G K+ VV Y P GN+ ++
Sbjct: 136 GHATQMAWAKSNLIGCGVKDCGRDSNGLNKVTVVCQYKPQGNFINQYI 183
>AF273830-1|AAG15179.1| 598|Caenorhabditis elegans nuclear receptor
NHR-88 protein.
Length = 598
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 98 PCSRLYSLWTSNASFSKSFDLEVNSLLIVLYV 3
P ++L SL N +K F + ++SLL+ LYV
Sbjct: 394 PLAKLSSLIGENVQLAKMFGIPIDSLLVELYV 425
>AC006671-1|AAF39914.2| 593|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 88, isoform a protein.
Length = 593
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 98 PCSRLYSLWTSNASFSKSFDLEVNSLLIVLYV 3
P ++L SL N +K F + ++SLL+ LYV
Sbjct: 389 PLAKLSSLIGENVQLAKMFGIPIDSLLVELYV 420
>Z78540-6|CAD30431.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 323 HFRLLAKGKLIDFAVPFIYAVSSLIFVFGSGDHPQ*TLSP 204
HF +L L+D VP A+SS + F GD P + +P
Sbjct: 615 HFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTP 654
>Z78540-5|CAB01738.2| 793|Caenorhabditis elegans Hypothetical
protein C33G3.1a protein.
Length = 793
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 323 HFRLLAKGKLIDFAVPFIYAVSSLIFVFGSGDHPQ*TLSP 204
HF +L L+D VP A+SS + F GD P + +P
Sbjct: 521 HFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTP 560
>Z72501-3|CAD30430.1| 887|Caenorhabditis elegans Hypothetical
protein C33G3.1b protein.
Length = 887
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 323 HFRLLAKGKLIDFAVPFIYAVSSLIFVFGSGDHPQ*TLSP 204
HF +L L+D VP A+SS + F GD P + +P
Sbjct: 615 HFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTP 654
>AJ133838-1|CAB44432.1| 793|Caenorhabditis elegans DYC-1 protein
protein.
Length = 793
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = -1
Query: 323 HFRLLAKGKLIDFAVPFIYAVSSLIFVFGSGDHPQ*TLSP 204
HF +L L+D VP A+SS + F GD P + +P
Sbjct: 521 HFNILMSNPLVDINVPSGAAMSSRMEQFDMGDTPGTSSTP 560
>Z81527-1|CAB04269.3| 290|Caenorhabditis elegans Hypothetical
protein F35E12.1 protein.
Length = 290
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Frame = +3
Query: 303 FGKEPEVLNCGHFTQIIWRSTSELGIG-------SAKSKTGKLYVVANYYPPGNYSGLFV 461
+ K+ E GH TQ++W +G G K K+ VV Y GN +
Sbjct: 207 YTKDTEKSGIGHATQMVWSQAYLIGCGVKDCGPDKTKKNMHKITVVCRYIEKGNIKDTNI 266
Query: 462 KN 467
N
Sbjct: 267 YN 268
>AC006627-4|AAK85459.1| 712|Caenorhabditis elegans Hypothetical
protein E01A2.2a protein.
Length = 712
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 10 RTMSRLFTSKSNDF-ENEALEVHNEYRREH 96
+T + TS+ +D E +A++ +NEY+ EH
Sbjct: 85 QTFKKFLTSQEDDISEEDAIKKYNEYKTEH 114
>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
protein C28A5.2 protein.
Length = 1218
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 438 GNYSGLFVKNVLPPGAMQFSSSYKVLLENRTTIW 539
G+ + VK +P + FS SY++L R+T W
Sbjct: 238 GSVHVILVKRCIPENSFGFSCSYELLSSFRSTEW 271
>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
protein C28A5.1 protein.
Length = 1223
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 438 GNYSGLFVKNVLPPGAMQFSSSYKVLLENRTTIW 539
G+ + VK +P + FS SY++L R+T W
Sbjct: 238 GSVHVILVKRCIPENSFGFSCSYELLSSFRSTEW 271
>AF098995-3|AAC67483.1| 276|Caenorhabditis elegans F-box b protein
protein 17 protein.
Length = 276
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 377 PQFTRRSPDYLCEMTTVQHFRLL 309
P + R S DY+CE VQ+F L
Sbjct: 169 PNYLRLSNDYICESILVQNFETL 191
>AC006801-2|AAF60751.1| 914|Caenorhabditis elegans Hypothetical
protein Y52D5A.1 protein.
Length = 914
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 403 PVLLFALPIPNSLVDLQIICVK*PQFNTSGSLPKENSLISL 281
PV+ L + NS+ DL +I + N+ LP NS+ L
Sbjct: 345 PVIYIFLKMSNSIFDLPVIYIFLKMSNSIFKLPMNNSIFDL 385
>AC006717-1|AAY55883.2| 101|Caenorhabditis elegans Hypothetical
protein Y14H12A.2 protein.
Length = 101
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 276 WYSEINEFSFGKEPEVLNCGHF 341
W S + F EP++L CGHF
Sbjct: 11 WASWPSPAKFSGEPDILQCGHF 32
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,823,068
Number of Sequences: 27780
Number of extensions: 346090
Number of successful extensions: 1055
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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