Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1120
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   7.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    21   9.5  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 399 TGKLYVVANYYPPGNYSGLFVKNVLPPGAMQ 491
           TGK+    + +P    + L ++ +  PGAM+
Sbjct: 231 TGKVVYFTSLFPYALLTILLIRGLTLPGAME 261


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 399 TGKLYVVANYYPPGNYSGLFVKNVLPPGAMQ 491
           TGK+    + +P    + L ++ +  PGAM+
Sbjct: 284 TGKVVYFTSLFPYALLTILLIRGLTLPGAME 314


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 420 ANYYPPGNYSGLFVKNVLP 476
           AN +  G+     VKN++P
Sbjct: 588 ANVFAKGDMEAFLVKNIIP 606


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 109 EAKRHALVCIHYGLPML 59
           E   HA++C++ GL M+
Sbjct: 333 ERPDHAVLCVYMGLSMV 349


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 113 TRGETPCSRLYSLWTSNASFSKSFDLEVNSLLI 15
           +RG+   SR+  L   +   S+    EV SLL+
Sbjct: 19  SRGDNDRSRIARLGRDDGGKSRQSSFEVTSLLM 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,337
Number of Sequences: 438
Number of extensions: 3930
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)