Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1119
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   2.1  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   3.6  
SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subuni...    26   6.3  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 111 ESFRTFQFQCSKFIYVVHHETAI*NCDNNESDVSYCNVSFN 233
           ES   F+ +C   + V+    AI +C NN SD+   N+S+N
Sbjct: 415 ESVNIFREEC---LSVLRSWNAILHCSNNSSDLLERNMSYN 452


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 530 FIYSNYEVLFDR*Y*VLCYCVC 595
           F+Y N  VLFD  Y V  Y VC
Sbjct: 561 FVYDNEIVLFDTCYMVCTYIVC 582


>SPBC15D4.06 |||NatC N-acetyltransferase complex catalytic subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 150

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 486 SYYNQVGNCRYKYFYWKYI 430
           S+Y ++G CRYK  Y  Y+
Sbjct: 119 SFYERLGFCRYKRLYRYYL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,595
Number of Sequences: 5004
Number of extensions: 50526
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)