Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1119
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046...    29   5.0  
07_03_0590 + 19786960-19787136,19787198-19787272,19787676-197881...    28   8.7  

>01_06_0405 +
           29103723-29103839,29103928-29104012,29104572-29104674,
           29104798-29104882,29105414-29105497,29105627-29105730,
           29106522-29106783,29106978-29107414,29107637-29107718,
           29109913-29110089,29110640-29110732,29110812-29110877,
           29110992-29111038,29111165-29111430,29111443-29111845,
           29111992-29112376
          Length = 931

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 408 YIDILKIKYISNKNICIDNSLPGYSN*IKKNLSR-RPRKLHLLSIPITKSYLTD 566
           +++ L  K++S+   C    +P +S     N+S+   RKLHLL+I   K  L+D
Sbjct: 659 FLETLMHKWVSDDPHCASIDIPSHSI---HNMSKVSSRKLHLLNIVCRKVMLSD 709


>07_03_0590 +
           19786960-19787136,19787198-19787272,19787676-19788173,
           19788605-19788970,19788995-19789009
          Length = 376

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 22/77 (28%), Positives = 39/77 (50%)
 Frame = +3

Query: 414 DILKIKYISNKNICIDNSLPGYSN*IKKNLSRRPRKLHLLSIPITKSYLTDDIRCYVIVC 593
           D+L + +I+ +N C+   L    +  + +L    + +HLL +P  K +L D IR    + 
Sbjct: 207 DLLPL-HIAIENTCLHKYLEDNLSPSQNHLDYIYKLIHLLCLPEMKIFL-DTIR----LL 260

Query: 594 VN*LANDLD*LWYFLND 644
                N L+ LWY++ D
Sbjct: 261 AGKTNNLLEELWYYIED 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,199,344
Number of Sequences: 37544
Number of extensions: 234095
Number of successful extensions: 387
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 387
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)