BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1119 (727 letters) Database: fruitfly 53,049 sequences; 24,988,368 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BT015237-1|AAT94466.1| 1044|Drosophila melanogaster RE03681p pro... 31 2.1 AY058669-1|AAL13898.1| 1032|Drosophila melanogaster LD37985p pro... 31 2.1 AE014296-44|AAN11426.1| 1032|Drosophila melanogaster CG16940-PB,... 31 2.1 AE014296-43|AAF47351.2| 1032|Drosophila melanogaster CG16940-PA,... 31 2.1 AE014296-42|AAN11425.1| 1044|Drosophila melanogaster CG16940-PC,... 31 2.1 AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-P... 29 4.9 >BT015237-1|AAT94466.1| 1044|Drosophila melanogaster RE03681p protein. Length = 1044 Score = 30.7 bits (66), Expect = 2.1 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 417 ILKIKYISNKNICIDNSLPGYSN*IKKNLSRRPRKLHLLSI 539 ++ I Y K + + +P Y ++NL + PRKL LLS+ Sbjct: 982 VISINYKMQKVLVDTHGVPNYILIAERNLKQSPRKLQLLSV 1022 >AY058669-1|AAL13898.1| 1032|Drosophila melanogaster LD37985p protein. Length = 1032 Score = 30.7 bits (66), Expect = 2.1 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 417 ILKIKYISNKNICIDNSLPGYSN*IKKNLSRRPRKLHLLSI 539 ++ I Y K + + +P Y ++NL + PRKL LLS+ Sbjct: 970 VISINYKMQKVLVDTHGVPNYILIAERNLKQSPRKLQLLSV 1010 >AE014296-44|AAN11426.1| 1032|Drosophila melanogaster CG16940-PB, isoform B protein. Length = 1032 Score = 30.7 bits (66), Expect = 2.1 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 417 ILKIKYISNKNICIDNSLPGYSN*IKKNLSRRPRKLHLLSI 539 ++ I Y K + + +P Y ++NL + PRKL LLS+ Sbjct: 970 VISINYKMQKVLVDTHGVPNYILIAERNLKQSPRKLQLLSV 1010 >AE014296-43|AAF47351.2| 1032|Drosophila melanogaster CG16940-PA, isoform A protein. Length = 1032 Score = 30.7 bits (66), Expect = 2.1 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 417 ILKIKYISNKNICIDNSLPGYSN*IKKNLSRRPRKLHLLSI 539 ++ I Y K + + +P Y ++NL + PRKL LLS+ Sbjct: 970 VISINYKMQKVLVDTHGVPNYILIAERNLKQSPRKLQLLSV 1010 >AE014296-42|AAN11425.1| 1044|Drosophila melanogaster CG16940-PC, isoform C protein. Length = 1044 Score = 30.7 bits (66), Expect = 2.1 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 417 ILKIKYISNKNICIDNSLPGYSN*IKKNLSRRPRKLHLLSI 539 ++ I Y K + + +P Y ++NL + PRKL LLS+ Sbjct: 982 VISINYKMQKVLVDTHGVPNYILIAERNLKQSPRKLQLLSV 1022 >AE014134-2707|AAN10938.1| 2282|Drosophila melanogaster CG31817-PA protein. Length = 2282 Score = 29.5 bits (63), Expect = 4.9 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +1 Query: 196 TSRMCHIVMLVLIDDRSLKV-STSSFMCNNKQCKKSDVCDVDE 321 +SR C RS K +T S +C N QCK+SD + DE Sbjct: 603 SSRSCSCCSRTSSRKRSAKKPTTKSQVCENCQCKRSDAKNQDE 645 Database: fruitfly Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 24,988,368 Number of sequences in database: 53,049 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 25,703,618 Number of Sequences: 53049 Number of extensions: 455990 Number of successful extensions: 816 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 798 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 816 length of database: 24,988,368 effective HSP length: 83 effective length of database: 20,585,301 effective search space used: 3252477558 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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