Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1119
         (727 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    26   0.31 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    25   0.73 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   6.8  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   6.8  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 40  FHIVCFKFAHYFLGDFMRESKSFQNLFEHFNFN 138
           F IVC   AHY L DF       +  +++F++N
Sbjct: 12  FSIVCQAKAHYSLRDFKANIFQVKYQWKYFDYN 44


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 269 LCVTINNAKNPMFATWMNKKLFKEQR 346
           L  T+N   N M AT+MN+ L   Q+
Sbjct: 468 LMTTVNEGNNNMAATYMNECLLNIQK 493


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
 Frame = +3

Query: 438 SNKNICIDNSLPGYSN*IKKNLSRRPRKLHLLSI-----PITKSYLTDDIRCY 581
           SN +  +DN L GY N ++ +    P  + +  +     PI++  +T  + CY
Sbjct: 4   SNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCY 56


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 495 FLFSYYNQVGNCRYKYFYWKYIL 427
           + +S YN   N   K +Y  YI+
Sbjct: 89  YKYSNYNNYNNYNKKLYYKNYII 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,514
Number of Sequences: 438
Number of extensions: 3653
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)