Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1119
         (727 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g03590.1 68415.m00319 expressed protein similar to SP|Q41706 ...    29   3.1  
At1g61330.1 68414.m06912 F-box family protein contains Pfam prof...    27   9.6  

>At2g03590.1 68415.m00319 expressed protein similar to SP|Q41706 A3
           protein (unknown function) {Vigna unguiculata}
          Length = 390

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 32  NAFFILFVLNLRTIFWEIL*ENRNLFRIFSN 124
           +AF +  +LN+R ++W IL   R+ F+ + N
Sbjct: 272 SAFVVALILNIRFLYWPILGLPRSSFKAYLN 302


>At1g61330.1 68414.m06912 F-box family protein contains Pfam
           profile: PF00646 F-box domain; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 447

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +3

Query: 27  FKTHFSYCLF*ICALF----FGRFYERIEIFSESFRTFQFQCSKFIYVVHHETAI*NCDN 194
           FK  F    F  C LF    F +   ++E F    + F F+   + + +HH+  I N  N
Sbjct: 316 FKIFFKAPTF--CTLFDIAEFLKECPKLEQFIIDIQNFTFEPQMYFWEIHHKAQIQNTSN 373

Query: 195 N 197
           N
Sbjct: 374 N 374


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,673,022
Number of Sequences: 28952
Number of extensions: 224028
Number of successful extensions: 427
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)