Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1118
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    27   1.9  
SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom...    26   5.9  
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    26   5.9  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   5.9  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    25   7.8  

>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +1

Query: 406 IQPNRSIPH*C*IARTCLSRRYHDYIGEYCNLVWFIIL 519
           + P  ++P  C   R C+S+ YH++    C+ + FI++
Sbjct: 26  VWPLVTVPRQCICLRWCISKEYHEFT---CSSLQFIVI 60


>SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 200 LISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFFSERQSA 84
           ++ IH + F+ G    L+ PV    + CS   F+ + SA
Sbjct: 127 IVQIHLSSFYTGGSFTLEIPVKRTCSVCSGQGFNPKYSA 165


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 4   TFIVFVVCVVLAQALTDEQKENLKKHRADCLSEKKADEQLVNKLKTGD-FKTENEPL 171
           TF++FVV ++L + L      ++ K+ +  + ++   E    KL  GD F+    P+
Sbjct: 277 TFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +3

Query: 522 FNLYLFGKFCLVVVTYSIENQNLIFFCVRHSFVYLV*CFLVISFISY 662
           F+ +LF  FC +   Y + +   I   +   F+YL+  F+ I F ++
Sbjct: 405 FSFWLFSIFCTIAAYYLVSSSTKITVFI---FLYLMLTFIGIIFSTF 448


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -1

Query: 224 PSLVISCDLISIHRAYFFNGSFSVLKSPVF--SLFTNCSSAFFSERQSALCF-FKFSFCS 54
           P L+I  +++S H  YFFN    VL  P+   S +    S FF    + L F F  +F S
Sbjct: 83  PGLIIQ-NMVSFHSTYFFN----VLLPPIILNSGYELHQSNFFRNIGTILTFAFAGTFIS 137

Query: 53  SV 48
           +V
Sbjct: 138 AV 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,160
Number of Sequences: 5004
Number of extensions: 57244
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)