BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1118 (686 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 27 1.9 SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pom... 26 5.9 SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 26 5.9 SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ... 26 5.9 SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo... 25 7.8 >SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 668 Score = 27.5 bits (58), Expect = 1.9 Identities = 11/38 (28%), Positives = 22/38 (57%) Frame = +1 Query: 406 IQPNRSIPH*C*IARTCLSRRYHDYIGEYCNLVWFIIL 519 + P ++P C R C+S+ YH++ C+ + FI++ Sbjct: 26 VWPLVTVPRQCICLRWCISKEYHEFT---CSSLQFIVI 60 >SPBC1347.05c |||DNAJ domain protein Scj1|Schizosaccharomyces pombe|chr 2|||Manual Length = 381 Score = 25.8 bits (54), Expect = 5.9 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = -1 Query: 200 LISIHRAYFFNGSFSVLKSPVFSLFTNCSSAFFSERQSA 84 ++ IH + F+ G L+ PV + CS F+ + SA Sbjct: 127 IVQIHLSSFYTGGSFTLEIPVKRTCSVCSGQGFNPKYSA 165 >SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 629 Score = 25.8 bits (54), Expect = 5.9 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +1 Query: 4 TFIVFVVCVVLAQALTDEQKENLKKHRADCLSEKKADEQLVNKLKTGD-FKTENEPL 171 TF++FVV ++L + L ++ K+ + + ++ E KL GD F+ P+ Sbjct: 277 TFLIFVVSIILYRTL----NRDINKYNSAFVDQEDVQEDFGWKLVHGDVFRPPRRPM 329 >SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 581 Score = 25.8 bits (54), Expect = 5.9 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = +3 Query: 522 FNLYLFGKFCLVVVTYSIENQNLIFFCVRHSFVYLV*CFLVISFISY 662 F+ +LF FC + Y + + I + F+YL+ F+ I F ++ Sbjct: 405 FSFWLFSIFCTIAAYYLVSSSTKITVFI---FLYLMLTFIGIIFSTF 448 >SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharomyces pombe|chr 1|||Manual Length = 569 Score = 25.4 bits (53), Expect = 7.8 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Frame = -1 Query: 224 PSLVISCDLISIHRAYFFNGSFSVLKSPVF--SLFTNCSSAFFSERQSALCF-FKFSFCS 54 P L+I +++S H YFFN VL P+ S + S FF + L F F +F S Sbjct: 83 PGLIIQ-NMVSFHSTYFFN----VLLPPIILNSGYELHQSNFFRNIGTILTFAFAGTFIS 137 Query: 53 SV 48 +V Sbjct: 138 AV 139 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,720,160 Number of Sequences: 5004 Number of extensions: 57244 Number of successful extensions: 162 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 155 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 162 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 317927284 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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