Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1118
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    30   1.5  
02_04_0431 - 22841708-22842571,22842659-22842743,22842796-228428...    30   1.5  
11_06_0066 - 19741883-19742263,19743001-19743231,19743378-197435...    28   6.0  
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559     28   8.0  
03_03_0194 + 15319764-15319982,15320377-15320481,15320523-15320621     28   8.0  

>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = +1

Query: 22  VCVVLAQALTDEQKENLKKHRADCLSEKKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 201
           VC+V+      +  E +KK  ++  SE++    LV  L   D+   N  L +   C  I 
Sbjct: 46  VCIVIGYCEGGDMSEAIKKANSNYFSEERLCMWLVQLLMALDYLHVNHILHRDVKCSNI- 104

Query: 202 SQLMTKDGKFK-KDVALAKCL 261
              +TKD   +  D  LAK L
Sbjct: 105 --FLTKDQNIRLGDFGLAKVL 123


>02_04_0431 -
           22841708-22842571,22842659-22842743,22842796-22842869,
           22842953-22843002,22843086-22843167,22843941-22843987,
           22844089-22844131,22844219-22844299,22844413-22844458,
           22844557-22844603,22844709-22844774,22845030-22845096,
           22845194-22845279
          Length = 545

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 1/81 (1%)
 Frame = +1

Query: 25  CVVLAQALTDEQKENLKKHRADCLSEKKADEQLVNKLKTGDFKTENEPLKKYALCMLIKS 204
           C+V +     +  E +KK R    SE++        L   D+   N  L +   C  I  
Sbjct: 78  CIVTSYCEGGDMAERIKKARGVLFSEERVCRWFTQLLLALDYLHCNRVLHRDLKCSNI-- 135

Query: 205 QLMTKDGKFK-KDVALAKCLM 264
            L+TKD   +  D  LAK LM
Sbjct: 136 -LLTKDNNIRLADFGLAKLLM 155


>11_06_0066 -
           19741883-19742263,19743001-19743231,19743378-19743530,
           19743667-19743726,19743806-19743874,19744639-19744719,
           19744818-19744920,19745392-19745534,19745621-19745683,
           19745803-19745870,19745974-19746055,19746147-19746260,
           19746362-19746570,19746647-19746818
          Length = 642

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 633 IKRDKQSYDEHRRKLNFGSRSNMLQQLNKIYRTDI 529
           +KR KQ  +E R+KL  GS S +L+Q+    R D+
Sbjct: 353 LKRQKQEIEELRKKLQ-GSHSEVLEQVILKQRNDM 386


>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
          Length = 789

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -3

Query: 618 QSYDEHRRKLNFGSRSNMLQQLNKIYRTD 532
           +SY++ +R L+FGS S+  +  NK +R++
Sbjct: 720 RSYEKKKRSLSFGSTSSSHEHKNKRHRSN 748


>03_03_0194 + 15319764-15319982,15320377-15320481,15320523-15320621
          Length = 140

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 496 CNILRYNHDIV*INTSELFNTNEVWNGWVGLCVYKK 389
           C I    HD+  I++S  F    +   W G+C++KK
Sbjct: 99  CYIYESKHDL--ISSSNKFGAKFLMGTWCGVCMWKK 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,632,903
Number of Sequences: 37544
Number of extensions: 329026
Number of successful extensions: 735
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)