Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1118
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)                    29   2.7  
SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25)                29   4.7  

>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 267 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 395
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)
          Length = 905

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 480 YRRILQSCMVYYSNFN--LYLFGKFCLVVVTYSIENQNLIFF 599
           Y  +L+ CMV+Y +++  L  +G F   VV Y      ++F+
Sbjct: 797 YENLLRLCMVFYDSYDYKLVFYGFFAYKVVFYDSYAYKVVFY 838


>SB_26446| Best HMM Match : Ion_trans (HMM E-Value=0.25)
          Length = 511

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/73 (26%), Positives = 32/73 (43%)
 Frame = -3

Query: 627 RDKQSYDEHRRKLNFGSRSNMLQQLNKIYRTDID*S*NNKPYKIAIFSDIIMISSR*TRP 448
           RD+   D    K+     SN L+++N   +T +    NN   ++   S +     R T  
Sbjct: 344 RDEFVKDFEEIKVKMDEHSNELEEINDTLKTVLHMLQNNNQEEVRSVSSVTADDLRQTMS 403

Query: 447 SYLTLMRYGTVGL 409
           S L++ R   +GL
Sbjct: 404 SILSIPRQSIMGL 416


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,796,338
Number of Sequences: 59808
Number of extensions: 402957
Number of successful extensions: 1128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)