Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1118
(686 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical p... 32 0.44
AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 prote... 31 1.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 31 1.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 31 1.0
U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical pr... 28 7.2
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum... 28 7.2
AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal tr... 28 7.2
AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA ... 28 7.2
AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation su... 28 7.2
Z68751-9|CAA92979.2| 238|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z68337-11|CAA92754.2| 238|Caenorhabditis elegans Hypothetical p... 27 9.5
U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein. 27 9.5
U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical pr... 27 9.5
U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein ... 27 9.5
>Z99281-52|CAB16507.3| 512|Caenorhabditis elegans Hypothetical
protein Y57G11C.5 protein.
Length = 512
Score = 31.9 bits (69), Expect = 0.44
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -3
Query: 510 KPYKIAIFSDIIMISS-R*TRPSYLTLMRYGTVGLDYVFTRKERASGLSRGSISHNSR 340
+P +I F + + S RPS LT YG+ GL+ + K R +GL+R + +++ +
Sbjct: 140 RPSRITKFLNSLTFSPVSLNRPSLLTTNGYGSAGLNATWIGKTRKAGLNRFACTYHKK 197
>AY130758-3|AAN61519.1| 10578|Caenorhabditis elegans 1MDa_1 protein
protein.
Length = 10578
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +1
Query: 37 AQALTDEQKENLKKHRADCLSEKKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 216
A A ++K++ KH AD +K+ D++L + K +++ LKK A L K
Sbjct: 7269 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7324
Query: 217 KDGKFKKD 240
KD K K++
Sbjct: 7325 KDDKLKQE 7332
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +1
Query: 37 AQALTDEQKENLKKHRADCLSEKKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 216
A A ++K++ KH AD +K+ D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 217 KDGKFKKD 240
KD K K++
Sbjct: 7345 KDDKLKQE 7352
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +1
Query: 37 AQALTDEQKENLKKHRADCLSEKKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMT 216
A A ++K++ KH AD +K+ D++L + K +++ LKK A L K
Sbjct: 7289 ADAKLKKEKDDKLKHEADAKLQKEKDDKLKQEADAKLKKEKDDRLKKDADAKLQKE---- 7344
Query: 217 KDGKFKKD 240
KD K K++
Sbjct: 7345 KDDKLKQE 7352
>U88172-8|AAB42258.1| 312|Caenorhabditis elegans Hypothetical
protein ZK354.3 protein.
Length = 312
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +1
Query: 52 DEQKENLKKHRADCLSEKKADEQLVNKLKTGDFKTENEPLKK 177
D++KE+ K+ A +KK+DE+ + K+ + K E KK
Sbjct: 271 DDKKEDDKEKSATKSEDKKSDEKKTEEKKSDEKKNEKSEEKK 312
>Z70038-8|CAA93887.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 302 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 424
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>Z68319-6|CAA92704.2| 618|Caenorhabditis elegans Hypothetical
protein ZK1067.6 protein.
Length = 618
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 302 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 424
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
homolog protein 1 protein.
Length = 1722
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +3
Query: 483 RRILQSCMVYYSNFNLYLFGKFCLVVVTYSIENQNLIFFCVR 608
+RI +S M SN + YLFG VV+ ++I L+FF +R
Sbjct: 1649 QRIKESAM---SNIS-YLFGPIIAVVIVFAILGCLLLFFVIR 1686
>AY428645-1|AAR27937.1| 892|Caenorhabditis elegans microsomal
triglyceride transferprotein protein.
Length = 892
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 10 IVFVVCVVLAQALTDEQKENLKKHRADCL-SEKKADEQLVNKLKTGD-FKTEN 162
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>AY220985-1|AAO65265.1| 618|Caenorhabditis elegans putative RNA
binding protein SYM-2 protein.
Length = 618
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +2
Query: 302 LPGQQRQQPSPNSLELCEMLPRERPEARSFLVNT*SNPTVP 424
L GQQ Q P P L LP + P+ + F + S P P
Sbjct: 481 LVGQQHQVPPPAPLGFMGQLPPQAPQPQQFWSSYPSPPISP 521
>AF045645-4|AAC02607.3| 892|Caenorhabditis elegans Defecation
suppressor of clk-1protein 4 protein.
Length = 892
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 10 IVFVVCVVLAQALTDEQKENLKKHRADCL-SEKKADEQLVNKLKTGD-FKTEN 162
+ V V LA DE K+NL+KH D ++ K +E V LK F+TE+
Sbjct: 10 LAVTVGVCLAVPDLDEIKKNLRKHGPDYYKNQPKMNENTVRLLKVDYWFRTES 62
>Z68751-9|CAA92979.2| 238|Caenorhabditis elegans Hypothetical
protein T05E11.7 protein.
Length = 238
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1
Query: 58 QKENLKKHRADCLSEKKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKK 237
QK + + A EKK E+ +K K+ENE KK + K + T++ K KK
Sbjct: 35 QKSSKSQQPAGSAEEKKNPEKAEDKQNRKSKKSENEKSKKGSSKKSEKKE-KTEEKKSKK 93
Query: 238 D 240
D
Sbjct: 94 D 94
>Z68337-11|CAA92754.2| 238|Caenorhabditis elegans Hypothetical
protein T05E11.7 protein.
Length = 238
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1
Query: 58 QKENLKKHRADCLSEKKADEQLVNKLKTGDFKTENEPLKKYALCMLIKSQLMTKDGKFKK 237
QK + + A EKK E+ +K K+ENE KK + K + T++ K KK
Sbjct: 35 QKSSKSQQPAGSAEEKKNPEKAEDKQNRKSKKSENEKSKKGSSKKSEKKE-KTEEKKSKK 93
Query: 238 D 240
D
Sbjct: 94 D 94
>U58086-1|AAC47123.1| 803|Caenorhabditis elegans CUL-4 protein.
Length = 803
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 88 DCLSEKKADEQLVNKLKTGDFKTENEPLK 174
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 390 DLVSELLAFKKKVDFIMTGSFKSANDPVK 418
>U39996-4|AAA81090.2| 266|Caenorhabditis elegans Hypothetical
protein C56E6.2 protein.
Length = 266
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 34 LAQALTDEQKENLKKHRADCLSEKKADEQLVNKLKT--GDFKTENEP 168
L A+ E +++ + R + SEKK D QL+ K K GD K E+ P
Sbjct: 206 LFAAILSELSDDVLQSRQES-SEKKTDLQLIRKEKVSLGDDKFEDNP 251
>U29536-1|AAA68791.3| 840|Caenorhabditis elegans Cullin protein 4
protein.
Length = 840
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +1
Query: 88 DCLSEKKADEQLVNKLKTGDFKTENEPLK 174
D +SE A ++ V+ + TG FK+ N+P+K
Sbjct: 427 DLVSELLAFKKKVDFIMTGSFKSANDPVK 455
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,967,792
Number of Sequences: 27780
Number of extensions: 318825
Number of successful extensions: 1025
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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