Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1117
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0157 - 13556708-13556813,13556831-13557001,13559558-135597...    29   3.5  

>10_07_0157 -
           13556708-13556813,13556831-13557001,13559558-13559757,
           13559809-13559835
          Length = 167

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 105 GRSEAYKPP-HSIILMLKLLRDARRPITVLPRLILYCVCVK*LQP*ETVCAPALSLPYIY 281
           G S +Y+PP HS+I    LLR+    +  LP LIL    ++ LQ  E+    AL+ P  Y
Sbjct: 41  GLSRSYEPPTHSVIGTQLLLRN-EDAVMFLPALILNLYLLEHLQKWESA---ALNAPAHY 96

Query: 282 S 284
           S
Sbjct: 97  S 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,748,339
Number of Sequences: 37544
Number of extensions: 222688
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)