Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1117
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    29   3.2  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        29   3.2  
U67949-2|AAB07560.2|  368|Caenorhabditis elegans Hypothetical pr...    28   7.3  

>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 100  SPEGVKHTNHRIRLF*C*SCCGTRGVLSLCCLVLY 204
            S  GV  T  R R   C  CC  RG L  CC+  +
Sbjct: 1828 SDVGVYSTKKRQRGVKCPKCCTRRGCLCKCCIFCF 1862


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +1

Query: 100  SPEGVKHTNHRIRLF*C*SCCGTRGVLSLCCLVLY 204
            S  GV  T  R R   C  CC  RG L  CC+  +
Sbjct: 1828 SDVGVYSTKKRQRGVKCPKCCTRRGCLCKCCIFCF 1862


>U67949-2|AAB07560.2|  368|Caenorhabditis elegans Hypothetical
           protein F55A4.2 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 627 RPLDPHPPSGRARPRPDATD 686
           +P   HPP+  A PRPD T+
Sbjct: 20  KPPPTHPPAPTAAPRPDTTE 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,757,265
Number of Sequences: 27780
Number of extensions: 192719
Number of successful extensions: 395
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 395
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)