Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1116
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    66   8e-12
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   7.5  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.9  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 65.7 bits (153), Expect = 8e-12
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
 Frame = +3

Query: 255 KRLAFNYLEEIAQEFFQQYGHR-LNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXX 431
           ++LAF+YLEE+A EF+  +G   L    RPY F++FDT MQ++++ Y             
Sbjct: 73  RKLAFSYLEELAGEFWNSFGEEALQPGLRPYAFVQFDTFMQKSKRVY----NTPRANDNL 128

Query: 432 SHLAPQLGDVQRIMMQNIDDVLQRG 506
             L  +L DV R+M +NI+D+L RG
Sbjct: 129 DKLNTELKDVTRVMTKNIEDLLYRG 153



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 11/17 (64%), Positives = 15/17 (88%)
 Frame = +1

Query: 202 YLIENHICYLVLCERNY 252
           YLI+N ICYL +CE++Y
Sbjct: 55  YLIDNGICYLCICEQSY 71


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 571  GRHVSQHEVDAGEGDRRSRYRARDCALLLGSLDDSM 678
            G   +  E+D+ EG  R R R   C L    LD  +
Sbjct: 1622 GSKTTSWELDSTEGSERMRKRLMPCLLQSSELDSKL 1657


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +3

Query: 261 LAFNYLEEIAQEFFQQY 311
           L++NYL EI  +FFQ +
Sbjct: 837 LSYNYLTEIPSKFFQNF 853


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,322
Number of Sequences: 5004
Number of extensions: 50073
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)