Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1116
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0257 - 32697469-32697520,32698183-32698301,32698536-326985... 62 4e-10
01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011 62 5e-10
08_02_0127 + 12840738-12840913,12841475-12841635,12842123-128422... 44 1e-04
06_01_0688 - 5022703-5022805,5023615-5023694,5024305-5024381,502... 39 0.006
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334 33 0.28
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 30 1.9
12_01_0305 + 2304572-2304677,2305414-2305481,2305585-2305716,230... 29 4.5
11_01_0300 + 2253957-2254245,2254783-2254850,2254967-2255098,225... 29 5.9
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 29 5.9
>03_06_0257 -
32697469-32697520,32698183-32698301,32698536-32698556,
32698903-32698979,32699331-32699477,32699561-32699721,
32700320-32700522
Length = 259
Score = 62.5 bits (145), Expect = 4e-10
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
K+LAF YLE++ EF + G ++ T RPY FI+FDT +Q+T+K Y + +
Sbjct: 87 KKLAFQYLEDLKNEFERVNGSQIETAARPYAFIKFDTFIQKTKKLYLD----TRTQRNLA 142
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
L +L +V +IM +N+ +VL G
Sbjct: 143 KLNDELYEVHQIMTRNVQEVLGVG 166
Score = 31.5 bits (68), Expect = 0.84
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 5/40 (12%)
Frame = +3
Query: 126 MVLMTMIARVADGLPLAATM-----QEDEQLFD*KSHMLF 230
MV +TM+ARV DGLPLA + Q+D + ++ +LF
Sbjct: 1 MVKLTMVARVTDGLPLAEGLDDGRDQKDADFYKQQAKLLF 40
Score = 31.1 bits (67), Expect = 1.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 202 YLIENHICYLVLCERNY 252
Y+IE +CYL +C+R+Y
Sbjct: 69 YIIEGRVCYLTMCDRSY 85
>01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011
Length = 199
Score = 62.1 bits (144), Expect = 5e-10
Identities = 32/84 (38%), Positives = 50/84 (59%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
K+LAF YLE++ EF + G+++ T RPY FI+FDT +Q+T+K Y + +
Sbjct: 82 KKLAFQYLEDLKNEFERVNGNQIETAARPYAFIKFDTFIQKTKKLYLD----TRTQRNLA 137
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
L +L +V +IM +N +VL G
Sbjct: 138 KLNDELYEVHQIMTRNFQEVLGVG 161
Score = 29.5 bits (63), Expect = 3.4
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 126 MVLMTMIARVADGLPLAATMQEDEQLFD 209
MV +TMIARV D LPL + + L D
Sbjct: 1 MVKLTMIARVTDDLPLVEGLDDGRDLKD 28
>08_02_0127 +
12840738-12840913,12841475-12841635,12842123-12842202,
12842435-12842550,12842570-12842705,12842738-12842872
Length = 267
Score = 44.0 bits (99), Expect = 1e-04
Identities = 18/40 (45%), Positives = 27/40 (67%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQ 374
K+LAF YLE++ EF + G+++ T RPY FI+F +Q
Sbjct: 78 KKLAFQYLEDLKNEFERVNGNQIETAARPYAFIKFGPYLQ 117
Score = 32.3 bits (70), Expect = 0.48
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +3
Query: 126 MVLMTMIARVADGLPLAATMQEDEQLFD 209
MV +TMIARV DGLPL + + L D
Sbjct: 1 MVKLTMIARVTDGLPLVEGLDDGRDLKD 28
Score = 29.1 bits (62), Expect = 4.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 202 YLIENHICYLVLCERNY 252
Y+IE +CYL +C+ +Y
Sbjct: 60 YIIEGRVCYLTMCDHSY 76
>06_01_0688 -
5022703-5022805,5023615-5023694,5024305-5024381,
5024670-5024816,5025654-5025876
Length = 209
Score = 38.7 bits (86), Expect = 0.006
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Frame = +3
Query: 126 MVLMTMIARVADGLPLAATM-----QEDEQLFD*KSHMLFGPV*KKLQKRLAFNYLEEIA 290
MV +TMIARV DGLPLA + Q+D + ++ +LF + K Q + +E
Sbjct: 1 MVKLTMIARVTDGLPLAEGLDDGRDQKDADFYKQQAKLLFKNL-SKGQHEASRMSIE--T 57
Query: 291 QEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXSHLAPQLGDVQRI 470
++ QY + L + DT +Q+T+K Y + + L +L +V +I
Sbjct: 58 GPYYFQYPYVL------CGYFILDTFIQKTKKLYLD----TRTQRNLAKLNDELYEVHQI 107
Query: 471 MMQNIDDVLQRG 506
M +N+ +VL G
Sbjct: 108 MTRNVQEVLGVG 119
>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
Length = 197
Score = 33.1 bits (72), Expect = 0.28
Identities = 21/84 (25%), Positives = 37/84 (44%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
+R+ F +LE+I F + YG T EF + + Y+ +
Sbjct: 74 RRIPFAFLEDIHGRFVKTYGRAALTSLAYGMNDEFSRVLSQQMDYYSNDPNADRI----N 129
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
+ ++ V+ +M+ NID VL+RG
Sbjct: 130 RMRGEISQVRTVMIDNIDKVLERG 153
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 30.3 bits (65), Expect = 1.9
Identities = 22/84 (26%), Positives = 34/84 (40%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
+R+ F YLE+I F + YG + EF R Q E +
Sbjct: 79 RRIPFLYLEDIQMRFIKNYGRIAHNALAYAMNDEF----SRVLHQQMEYFSSNPSADTLN 134
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
L G++ +M+ NI+ +L RG
Sbjct: 135 RLR---GEIHTVMVDNIEKILDRG 155
>12_01_0305 +
2304572-2304677,2305414-2305481,2305585-2305716,
2307813-2307971,2308170-2308547
Length = 280
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -2
Query: 265 ASRFCSFFHTGPNNICDFQSNNCSSSCIVAAKGSPSATLA 146
A+R SF GP ++C +N S+ ++ GS +T +
Sbjct: 61 AARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFS 100
>11_01_0300 +
2253957-2254245,2254783-2254850,2254967-2255098,
2255811-2255969,2256124-2256489
Length = 337
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 265 ASRFCSFFHTGPNNICDFQSNNCSSSCIVAAKGSPSAT 152
A R SF GP +IC +N S+ ++ GS +T
Sbjct: 122 AGRIMSFSQKGPRSICILSANGTISNVALSQPGSSGST 159
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQY-GHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXX 431
++L ++E + ++F ++Y G + T E+ ++ K Y +
Sbjct: 78 RQLPVGFIERVKEDFSKKYSGGKAKNATANSLKREYGPKLKEHMK-YCDAHPEEIDKL-- 134
Query: 432 SHLAPQLGDVQRIMMQNIDDVLQRG 506
+ + Q+ +V+ +MMQNI+ VL RG
Sbjct: 135 AKVKAQVTEVKGVMMQNIEKVLDRG 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,205,570
Number of Sequences: 37544
Number of extensions: 312400
Number of successful extensions: 953
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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