Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1116
         (824 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)              92   6e-19
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)                54   1e-07
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)                29   6.1  
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)              29   6.1  
SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)                 28   8.0  

>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 91.9 bits (218), Expect = 6e-19
 Identities = 44/88 (50%), Positives = 60/88 (68%)
 Frame = +3

Query: 243 KKLQKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXX 422
           K   KR AF++LE+IA EF ++YGH+++  TRPY FIEFDT MQ+ ++ Y +        
Sbjct: 74  KPFSKRAAFSFLEDIASEFNREYGHQVSRATRPYPFIEFDTYMQKAKRNYQD----SRTR 129

Query: 423 XXXSHLAPQLGDVQRIMMQNIDDVLQRG 506
              + L  +L DVQR+M+QNIDDVLQRG
Sbjct: 130 RNLNRLNDELVDVQRVMVQNIDDVLQRG 157



 Score = 51.6 bits (118), Expect = 8e-07
 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
 Frame = +2

Query: 515 SELDTKTQNLSMMSQKYRKDATYLNTKSMLVKVTAGAVIVLVIVLY--FW 658
           S LD K  NL  +S+KY+KDATYLN +S   K  A A++  +I++Y  FW
Sbjct: 201 SLLDDKAGNLRFVSEKYKKDATYLNLRSAYAKYAALAIVCTIIIIYVRFW 250



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 135 MTMIARVADGLPLAATMQEDEQ 200
           MTMI R+ DGLPLAA+M  D++
Sbjct: 1   MTMIGRLPDGLPLAASMPSDQE 22


>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 22/39 (56%), Positives = 30/39 (76%)
 Frame = +3

Query: 243 KKLQKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEF 359
           K   KR AF++LE+IA EF ++YGH+++  TRPY FIEF
Sbjct: 74  KPFSKRAAFSFLEDIASEFNREYGHQVSRATRPYPFIEF 112



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +3

Query: 135 MTMIARVADGLPLAATMQEDEQ 200
           MTMI R+ DGLPLAA+M  D++
Sbjct: 1   MTMIGRLPDGLPLAASMPSDQE 22


>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
          Length = 3891

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 229  NNICDFQSNNCSSSCIVAAKGSPSATLAI 143
            NN+C +++  CS  C+V  K +   T  I
Sbjct: 1765 NNLCGWKNGGCSQLCLVTGKNTRRCTCII 1793


>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
          Length = 490

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -3

Query: 180 WQPKAARRRLLQS*SLTPYLKLKCLSLKHKIYVIEFNFNLRFFPSHSFENM 28
           W  K  +  L +S  LT  L+ K +  KH++ V+  + +   + + SFE +
Sbjct: 58  WDEKDTKNELAESSLLTKLLRDKLVVTKHEVEVLRSDPSSPLYSAKSFEEL 108


>SB_33334| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 775 FAHSYFGLTATICICCCVNYKSRSFPRDKP*LSWNHLEN 659
           F  +  GL   + I   V++ SR +P D P    NH++N
Sbjct: 10  FIFAIAGLILMVQILTTVHFSSRDWPDDHPIQGRNHIDN 48


>SB_30684| Best HMM Match : 7tm_1 (HMM E-Value=9.3e-11)
          Length = 540

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -2

Query: 802 FYSLIQNRVFAHSYFGLTATICICCCVNYKSRSFPRD 692
           F   I  R F   Y    + I  CCC N K+R    D
Sbjct: 446 FIYAISRRYFRQEYIKYLSRIFCCCCHNLKNRVHTTD 482


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,710,576
Number of Sequences: 59808
Number of extensions: 387981
Number of successful extensions: 1187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1076
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)