Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1116
(824 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC001364-1|AAH01364.1| 215|Homo sapiens SEC22B protein protein. 81 5e-15
BC007122-1|AAH07122.1| 307|Homo sapiens SEC22 vesicle trafficki... 51 6e-06
X92396-1|CAA63133.1| 220|Homo sapiens ORF protein. 39 0.019
BC056141-1|AAH56141.1| 220|Homo sapiens synaptobrevin-like 1 pr... 39 0.019
AK222794-1|BAD96514.1| 220|Homo sapiens synaptobrevin-like 1 va... 39 0.019
AJ549301-1|CAD70593.2| 179|Homo sapiens tetanus insensitive VAM... 39 0.019
AJ271736-1|CAB96816.1| 220|Homo sapiens synaptobrevin-like 1 pr... 39 0.019
BC018437-1|AAH18437.1| 250|Homo sapiens SEC22 vesicle trafficki... 33 0.95
BC006178-1|AAH06178.1| 303|Homo sapiens SEC22 vesicle trafficki... 33 0.95
AY359041-1|AAQ89400.1| 228|Homo sapiens SEC22C protein. 33 0.95
AF039568-1|AAD02171.1| 250|Homo sapiens vesicle trafficking pro... 33 0.95
Z48924-1|CAA88760.1| 118|Homo sapiens Vamp1 protein. 31 5.1
AJ295938-1|CAC16891.1| 260|Homo sapiens synaptobrevin like prot... 31 6.7
>BC001364-1|AAH01364.1| 215|Homo sapiens SEC22B protein protein.
Length = 215
Score = 81.0 bits (191), Expect = 5e-15
Identities = 40/84 (47%), Positives = 58/84 (69%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
K+LAF YLE++ EF +Q+G ++ TV+RPY+FIEFDT +Q+T+K Y +
Sbjct: 81 KKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYID----SRARRNLG 136
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
+ +L DVQRIM+ NI++VLQRG
Sbjct: 137 SINTELQDVQRIMVANIEEVLQRG 160
Score = 54.4 bits (125), Expect = 5e-07
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Frame = +2
Query: 512 LSELDTKTQNLSMMSQKYRKDATYLNTKSMLVKVTAGAVIVLVIVLY--FWVL 664
LS LD+K NLS +S+KYR+DA YLN +S K+ A AV +++++Y FW L
Sbjct: 163 LSALDSKANNLSSLSKKYRQDAKYLNMRSTYAKLAAVAVFFIMLIVYVRFWWL 215
Score = 49.6 bits (113), Expect = 1e-05
Identities = 23/25 (92%), Positives = 25/25 (100%)
Frame = +3
Query: 126 MVLMTMIARVADGLPLAATMQEDEQ 200
MVL+TMIARVADGLPLAA+MQEDEQ
Sbjct: 1 MVLLTMIARVADGLPLAASMQEDEQ 25
Score = 31.9 bits (69), Expect = 2.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +1
Query: 148 QESPTGCLWLPLCKRMSSYLIENHICYLVLCE 243
++SPT C L Y+IE +CYLVLCE
Sbjct: 46 EQSPTRCT-LEAGAMTFHYIIEQGVCYLVLCE 76
>BC007122-1|AAH07122.1| 307|Homo sapiens SEC22 vesicle trafficking
protein homolog A (S. cerevisiae) protein.
Length = 307
Score = 50.8 bits (116), Expect = 6e-06
Identities = 22/45 (48%), Positives = 32/45 (71%), Gaps = 1/45 (2%)
Frame = +3
Query: 261 LAFNYLEEIAQEFFQQYGH-RLNTVTRPYTFIEFDTCMQRTRKQY 392
LAF++L+E+ +EF Y + NT RPY FIEFD +QRT+++Y
Sbjct: 82 LAFSFLDELQKEFITTYNMMKTNTAVRPYCFIEFDNFIQRTKQRY 126
>X92396-1|CAA63133.1| 220|Homo sapiens ORF protein.
Length = 220
Score = 39.1 bits (87), Expect = 0.019
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 QKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXXXX 428
++ AFN+L EI + F YG R T PY EF + + K ++E
Sbjct: 71 ERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMET 129
Query: 429 XSHLAPQLGDVQRIMMQNIDDVLQRG 506
+ Q+ +++ IM++NID V QRG
Sbjct: 130 QA----QVDELKGIMVRNIDLVAQRG 151
>BC056141-1|AAH56141.1| 220|Homo sapiens synaptobrevin-like 1
protein.
Length = 220
Score = 39.1 bits (87), Expect = 0.019
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 QKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXXXX 428
++ AFN+L EI + F YG R T PY EF + + K ++E
Sbjct: 71 ERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMET 129
Query: 429 XSHLAPQLGDVQRIMMQNIDDVLQRG 506
+ Q+ +++ IM++NID V QRG
Sbjct: 130 QA----QVDELKGIMVRNIDLVAQRG 151
>AK222794-1|BAD96514.1| 220|Homo sapiens synaptobrevin-like 1
variant protein.
Length = 220
Score = 39.1 bits (87), Expect = 0.019
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 QKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXXXX 428
++ AFN+L EI + F YG R T PY EF + + K ++E
Sbjct: 71 ERSRAFNFLNEIKKRFQTTYGSRAQTAP-PYAMNSEFSSVLAAQLKHHSENKGLDKVMET 129
Query: 429 XSHLAPQLGDVQRIMMQNIDDVLQRG 506
+ Q+ +++ IM++NID V QRG
Sbjct: 130 QA----QVDELKGIMVRNIDLVAQRG 151
>AJ549301-1|CAD70593.2| 179|Homo sapiens tetanus insensitive VAMP
(Ti-VAMP) protein.
Length = 179
Score = 39.1 bits (87), Expect = 0.019
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 QKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXXXX 428
++ AFN+L EI + F YG R T PY EF + + K ++E
Sbjct: 30 ERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMET 88
Query: 429 XSHLAPQLGDVQRIMMQNIDDVLQRG 506
+ Q+ +++ IM++NID V QRG
Sbjct: 89 QA----QVDELKGIMVRNIDLVAQRG 110
>AJ271736-1|CAB96816.1| 220|Homo sapiens synaptobrevin-like 1
protein protein.
Length = 220
Score = 39.1 bits (87), Expect = 0.019
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +3
Query: 252 QKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXXXX 428
++ AFN+L EI + F YG R T PY EF + + K ++E
Sbjct: 71 ERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMET 129
Query: 429 XSHLAPQLGDVQRIMMQNIDDVLQRG 506
+ Q+ +++ IM++NID V QRG
Sbjct: 130 QA----QVDELKGIMVRNIDLVAQRG 151
>BC018437-1|AAH18437.1| 250|Homo sapiens SEC22 vesicle trafficking
protein homolog C (S. cerevisiae) protein.
Length = 250
Score = 33.5 bits (73), Expect = 0.95
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 261 LAFNYLEEIAQEFFQQYGHR-LNTVTRPYTFIEFDTCMQRTR 383
+AF +LE + EF Y + +RPY F+EFD+ +Q+ +
Sbjct: 82 MAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSIIQKVK 123
>BC006178-1|AAH06178.1| 303|Homo sapiens SEC22 vesicle trafficking
protein homolog C (S. cerevisiae) protein.
Length = 303
Score = 33.5 bits (73), Expect = 0.95
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 261 LAFNYLEEIAQEFFQQYGHR-LNTVTRPYTFIEFDTCMQRTR 383
+AF +LE + EF Y + +RPY F+EFD+ +Q+ +
Sbjct: 82 MAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSIIQKVK 123
>AY359041-1|AAQ89400.1| 228|Homo sapiens SEC22C protein.
Length = 228
Score = 33.5 bits (73), Expect = 0.95
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 261 LAFNYLEEIAQEFFQQYGHR-LNTVTRPYTFIEFDTCMQRTR 383
+AF +LE + EF Y + +RPY F+EFD+ +Q+ +
Sbjct: 82 MAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSIIQKVK 123
>AF039568-1|AAD02171.1| 250|Homo sapiens vesicle trafficking
protein protein.
Length = 250
Score = 33.5 bits (73), Expect = 0.95
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +3
Query: 261 LAFNYLEEIAQEFFQQYGHR-LNTVTRPYTFIEFDTCMQRTR 383
+AF +LE + EF Y + +RPY F+EFD+ +Q+ +
Sbjct: 82 MAFCFLETLWWEFTASYDTTCIGLASRPYAFLEFDSIIQKVK 123
>Z48924-1|CAA88760.1| 118|Homo sapiens Vamp1 protein.
Length = 118
Score = 31.1 bits (67), Expect = 5.1
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Frame = +2
Query: 512 LSELDTKTQNLSMMSQKYRKDATYL-------NTKSMLVKVTAGAVIVLVIVLYFW 658
LSELD + L + ++ A L N K M++ T A+IV+VIV+YF+
Sbjct: 62 LSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGTICAIIVVVIVIYFF 117
>AJ295938-1|CAC16891.1| 260|Homo sapiens synaptobrevin like protein
1B protein.
Length = 260
Score = 30.7 bits (66), Expect = 6.7
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +3
Query: 252 QKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTF-IEFDTCMQRTRKQYAEXXXXXXXXXX 428
++ AFN+L EI + F YG R T PY EF + + K ++E
Sbjct: 71 ERSRAFNFLNEIKKRFQTTYGSRAQTAL-PYAMNSEFSSVLAAQLKHHSENKGLDKVMET 129
Query: 429 XSHLAPQLGDVQRIMMQNI 485
+ Q+ +++ IM++NI
Sbjct: 130 QA----QVDELKGIMVRNI 144
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,190,694
Number of Sequences: 237096
Number of extensions: 1664142
Number of successful extensions: 4172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4151
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10315140830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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