Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1116
         (824 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical pr...    66   4e-11
U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    25   8.3  

>U67949-6|AAB07559.2|  214|Caenorhabditis elegans Hypothetical
           protein F55A4.1 protein.
          Length = 214

 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 31/88 (35%), Positives = 52/88 (59%)
 Frame = +3

Query: 243 KKLQKRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXX 422
           +   +++AF YL +I QEF  +   R+  V RPY F+EFD  +Q+ +++Y +        
Sbjct: 77  RNFPRKVAFQYLSDIGQEFLNENSSRIEQVVRPYHFLEFDKYIQQAKQRYGD-----TNK 131

Query: 423 XXXSHLAPQLGDVQRIMMQNIDDVLQRG 506
              + ++ +L DV RIM+ NI+DV+ RG
Sbjct: 132 HAMNTVSNELQDVTRIMVTNIEDVIHRG 159



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 202 YLIENHICYLVLCERNY 252
           Y+I  +IC LVLC+RN+
Sbjct: 63  YIIVQNICALVLCDRNF 79


>U80455-4|AAY55873.2|  315|Caenorhabditis elegans Hypothetical
           protein T01D1.7 protein.
          Length = 315

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 802 FYSLIQNRVFAHSYFGLTATICICCCVNYKSR 707
           FY     +    SYF +TAT+ + CC  Y +R
Sbjct: 107 FYEKYWTQCHIISYFSITATVSLACCTPYITR 138


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 25.4 bits (53), Expect(2) = 8.3
 Identities = 21/105 (20%), Positives = 40/105 (38%)
 Frame = -2

Query: 499 CSTSSMFCIMMRCTSPSCGARCEXXXXXXXXXXPSAYCFRVRCMHVSNSMNVYGRVTVFN 320
           C  SS  C    C+S S  + C            +    + +C +  N       ++   
Sbjct: 35  CGRSSSSC----CSSSSSNSYCIPVCMAQCQSSCTTPICQQQCSNQCNQQCTSITISSGP 90

Query: 319 LCPYCWKNSCAISSR*LNASRFCSFFHTGPNNICDFQSNNCSSSC 185
            C  C +++C+ +       R C       +N+C+  SN+C++ C
Sbjct: 91  SCSSC-QSACSSACTTPTCIRTCQ--RNSCSNLCNTGSNSCTNRC 132



 Score = 21.0 bits (42), Expect(2) = 8.3
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -2

Query: 208 SNNCSSSCIVAAKGSPSATLAIIV 137
           +N CS+SC  A     +  + I++
Sbjct: 146 TNTCSNSCSNACSNGGNQPIVIVI 169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,617,555
Number of Sequences: 27780
Number of extensions: 295917
Number of successful extensions: 909
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)