Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1116
(824 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex det... 25 0.64
DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex det... 25 0.64
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 25 0.64
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 25 0.64
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 25 0.64
AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 25 0.64
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 24 1.5
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 24 2.0
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 24 2.0
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 23 2.6
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 23 3.4
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 4.5
AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex det... 22 7.9
>DQ325105-1|ABD14119.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 25.4 bits (53), Expect = 0.64
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +1
Query: 727 NNKYISSLSN---QNSYVQKLYFEL 792
+N YIS++SN N+Y +KLY+ +
Sbjct: 86 SNNYISNISNYNNNNNYNKKLYYNI 110
>DQ325104-1|ABD14118.1| 180|Apis mellifera complementary sex
determiner protein.
Length = 180
Score = 25.4 bits (53), Expect = 0.64
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +1
Query: 727 NNKYISSLSN---QNSYVQKLYFEL 792
+N YIS++SN N+Y +KLY+ +
Sbjct: 86 SNNYISNISNYNNDNNYNKKLYYNI 110
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.64
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 613 DRRSRYRARDCALLLGSLDDSMIVTVCLGEMSATYN*HNNKYISSLSNQNSYVQKLYFEL 792
DR R R+R+ ++ SL ++ I + YN +NN Y N N+Y +KLY+ +
Sbjct: 68 DRTERERSRE-PKIISSLSNNTI-----HNNNYKYNYNNNNY-----NNNNYNKKLYYNI 116
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 25.4 bits (53), Expect = 0.64
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 613 DRRSRYRARDCALLLGSLDDSMIVTVCLGEMSATYN*HNNKYISSLSNQNSYVQKLYFEL 792
DR R R+R+ ++ SL ++ I + YN +NN Y N N+Y +KLY+ +
Sbjct: 68 DRAERERSRE-PKIISSLSNNTI-----HNNNYKYNYNNNNY-----NNNNYNKKLYYNI 116
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 25.4 bits (53), Expect = 0.64
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 694 LGEMSATYN*HNNKYISSLSNQNSYVQKLYFE 789
+ +S YN +NN Y N N+Y +KLY++
Sbjct: 315 ISSLSNNYNYNNNNY---KYNYNNYNKKLYYK 343
>AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex
determiner protein.
Length = 418
Score = 25.4 bits (53), Expect = 0.64
Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +1
Query: 727 NNKYISSLSN---QNSYVQKLYFEL 792
+N YIS++SN N+Y +KLY+ +
Sbjct: 324 SNNYISNISNYNNNNNYNKKLYYNI 348
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 24.2 bits (50), Expect = 1.5
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Frame = +1
Query: 622 SRYRARDCALLLGSLDDSMIVTVCLGEMSATYN*HNNKYISSLSNQNSY---VQKLYFEL 792
S+ R+RD S + +I ++ + YN +NN Y + + N+Y +KLY+ +
Sbjct: 296 SKERSRDRTERERSKEPKIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNI 355
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 23.8 bits (49), Expect = 2.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 727 NNKYISSLSNQNSYVQKLYFE 789
NN S+ +N N+Y +KLY++
Sbjct: 87 NNYKYSNYNNYNNYNKKLYYK 107
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 23.8 bits (49), Expect = 2.0
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 622 SRYRARDCALLLGSLDDSMIVTVCLGEMSATYN*HNNKYISSLSNQNSYVQKLYFE 789
S+ R+RD S + +I ++ + YN +NN + +N N+Y +KLY++
Sbjct: 296 SKERSRDRKERERSKEPKIISSLSNNYKYSNYNNYNNY---NNNNYNNYNKKLYYK 348
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 23.4 bits (48), Expect = 2.6
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = -3
Query: 177 QPKAARRRLLQS*S-LTPYLKLKCLSLK 97
+PK + LL S + L+PYL+ CLS +
Sbjct: 254 RPKMTPQSLLPSQTGLSPYLRFGCLSTR 281
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 23.0 bits (47), Expect = 3.4
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 622 SRYRARDCALLLGSLDDSMIVTVCLGEMSATYN*HNNKYISSLSNQNSYVQKLYFEL 792
S+ R+RD S + +I ++ + YN +NN Y N+Y +KLY+ +
Sbjct: 63 SKERSRDRTERERSREPKIISSLSNNYNYSNYNNYNNNY-------NNYNKKLYYNI 112
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 4.5
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = +1
Query: 619 RSRYRARDCALLLGSLDDSMIVTVCLGEMSATYN*HNNKYISSLSN--QNSY--VQKLYF 786
RS+ R+RD S + +I ++ + N +NN Y ++ +N N+Y +KLY+
Sbjct: 295 RSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNNNYNNYKKLYY 354
Query: 787 EL 792
+
Sbjct: 355 NI 356
>AY569698-1|AAS86651.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 21.8 bits (44), Expect = 7.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +1
Query: 727 NNKYISSLSNQNSYVQKLYFEL 792
+NK I + +N +Y +KLY+ +
Sbjct: 319 SNKTIHNNNNYKNYNKKLYYNI 340
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,377
Number of Sequences: 438
Number of extensions: 4355
Number of successful extensions: 27
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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