Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1116
(824 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g11890.1 68414.m01371 vesicle transport protein SEC22, putati... 62 6e-10
At2g25340.1 68415.m03031 synaptobrevin family protein similar to... 42 7e-04
At4g32150.1 68417.m04573 synaptobrevin family protein similar to... 39 0.005
At5g52270.1 68418.m06487 vesicle transport protein-related simil... 36 0.025
At5g22360.1 68418.m02609 synaptobrevin family protein similar to... 36 0.033
At2g33110.1 68415.m04059 synaptobrevin family protein similar to... 32 0.53
At4g15780.1 68417.m02402 synaptobrevin-related family protein si... 30 2.1
At1g04760.1 68414.m00472 synaptobrevin family protein similar to... 30 2.1
At1g74960.2 68414.m08700 3-ketoacyl-ACP synthase, putative simil... 29 2.8
At1g74960.1 68414.m08699 3-ketoacyl-ACP synthase, putative simil... 29 2.8
At1g04750.1 68414.m00470 synaptobrevin family protein similar to... 29 3.7
At2g32670.1 68415.m03994 synaptobrevin family protein similar to... 29 5.0
At1g02630.1 68414.m00213 equilibrative nucleoside transporter, p... 29 5.0
At2g43970.2 68415.m05468 La domain-containing protein contains P... 28 6.5
At2g43970.1 68415.m05467 La domain-containing protein contains P... 28 6.5
At3g14320.1 68416.m01811 zinc finger (C3HC4-type RING finger) fa... 24 8.0
At3g54300.1 68416.m06001 synaptobrevin family protein similar to... 28 8.7
At2g33120.1 68415.m04060 synaptobrevin-related protein / vesicl... 28 8.7
>At1g11890.1 68414.m01371 vesicle transport protein SEC22, putative
identified as SEC22 by Raikhel, NV, et al. in Plant
Physiol. 124: 1558-69 (2000); similar to vesicle
trafficking protein gb|U91538 from Mus musculus; ESTs
gb|F15494 and gb|F14097 come from this gene
Length = 218
Score = 61.7 bits (143), Expect = 6e-10
Identities = 32/84 (38%), Positives = 49/84 (58%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
K+LAF YLE++ EF + G + T RPY FI+FDT +Q+T+K Y + +
Sbjct: 82 KKLAFQYLEDLKNEFERVNGPNIETAARPYAFIKFDTFIQKTKKLYQD----TRTQRNIA 137
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
L +L +V +IM +N+ +VL G
Sbjct: 138 KLNDELYEVHQIMTRNVQEVLGVG 161
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/28 (57%), Positives = 19/28 (67%)
Frame = +3
Query: 126 MVLMTMIARVADGLPLAATMQEDEQLFD 209
MV MT+IARV DGLPLA + + L D
Sbjct: 1 MVKMTLIARVTDGLPLAEGLDDGRDLPD 28
Score = 31.1 bits (67), Expect = 0.93
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +1
Query: 202 YLIENHICYLVLCERNY 252
Y+IE +CYL +C+R+Y
Sbjct: 64 YIIEGRVCYLTMCDRSY 80
>At2g25340.1 68415.m03031 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 41.5 bits (93), Expect = 7e-04
Identities = 23/84 (27%), Positives = 41/84 (48%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
+R+ F++LE+I Q F + YG +++ EF R Q E S
Sbjct: 73 RRIPFSFLEDIHQRFVRTYGRAIHSAQAYAMNDEF----SRVLNQQIEYYSNDPNADTIS 128
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
+ ++ V+ +M++NID++L RG
Sbjct: 129 RIKGEMNQVRDVMIENIDNILDRG 152
>At4g32150.1 68417.m04573 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
+R+ F +LE+I Q F + YG ++T EF R Q + +
Sbjct: 73 RRIPFAFLEDIHQRFVRTYGRAVHTALAYAMNEEF----SRVLSQQIDYYSNDPNADRIN 128
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
+ ++ V+ +M++NID VL RG
Sbjct: 129 RIKGEMNQVRGVMIENIDKVLDRG 152
>At5g52270.1 68418.m06487 vesicle transport protein-related similar
to vesicle trafficking protein sec22b [Mus musculus]
GI:1907386
Length = 214
Score = 36.3 bits (80), Expect = 0.025
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRL-NTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXX 431
++L FNYL+ + +E + L +++PY+FI F + R RKQY +
Sbjct: 84 RKLLFNYLQNLNKELDKLDEKALIQKISKPYSFIRFGKIIGRIRKQYIDTRTQANLSKLN 143
Query: 432 SHLAPQLGDVQRIMMQNIDDVLQR 503
+ +L ++ ++++D++QR
Sbjct: 144 ALRKQELD----VVTEHLNDIIQR 163
>At5g22360.1 68418.m02609 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 221
Score = 35.9 bits (79), Expect = 0.033
Identities = 20/84 (23%), Positives = 39/84 (46%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
+R+ F+YLEEI F + YG + EF R Q E +
Sbjct: 74 RRVPFSYLEEIHMRFMKNYGKVAHNAPAYAMNDEF----SRVLHQQMEFFSSNPSVDTLN 129
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
+ ++ +++ +M++NI+ +++RG
Sbjct: 130 RVRGEVSEIRSVMVENIEKIMERG 153
>At2g33110.1 68415.m04059 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 217
Score = 31.9 bits (69), Expect = 0.53
Identities = 18/87 (20%), Positives = 38/87 (43%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
+ + +LE + ++F+++YG + + + + QY +
Sbjct: 75 REIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYC--MDHPDEISNLA 132
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRGAYC 515
Q+ +V+ +MM+NI+ VL RG C
Sbjct: 133 KAKAQVSEVKSLMMENIEKVLARGVIC 159
>At4g15780.1 68417.m02402 synaptobrevin-related family protein
similar to Vesicle-associated membrane protein 722
(AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
{Arabidopsis thaliana}
Length = 194
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = +3
Query: 249 LQKRLAFNYLEEIAQEFFQQY-GHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXX 425
L K+++ +LE + +F ++Y G + +T EF M+ +
Sbjct: 74 LSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHAEEIEKLI 133
Query: 426 XXSHLAPQLGDVQRIMMQNIDDVLQRG 506
+ Q+ +V+ IM++NID + RG
Sbjct: 134 ---KVKAQVSEVKSIMLENIDKAIDRG 157
>At1g04760.1 68414.m00472 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 220
Score = 29.9 bits (64), Expect = 2.1
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGH-RLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXX 431
+++ +LE + ++F ++YG + +T EF + ++ + A+
Sbjct: 75 RQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHPEEISKL--- 131
Query: 432 SHLAPQLGDVQRIMMQNIDDVLQRG 506
S + Q+ +V+ +MM+NI+ VL RG
Sbjct: 132 SKVKAQVTEVKGVMMENIEKVLDRG 156
>At1g74960.2 68414.m08700 3-ketoacyl-ACP synthase, putative similar
to 3-ketoacyl-ACP synthase [Cuphea pulcherrima]
gi|3800747|gb|AAC68860; identical to cDNA
beta-ketoacyl-ACP synthetase 2 nuclear gene for plastid
product GI:14582700
Length = 541
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 562 VPEGRHVSQHEVDAGEGDR-RSRYRARDCALLLGSLDDSMIVTVCLGEMSATYN*HNNKY 738
V G S+ V G R R R + C++ GS +VT CL T+ +NN
Sbjct: 23 VSHGGGDSRQAVALQSGGRSRRRRQLSKCSVASGSASIQALVTSCLDFGPCTHY-NNNNA 81
Query: 739 ISSLSNQNS 765
+SSL NS
Sbjct: 82 LSSLFGSNS 90
>At1g74960.1 68414.m08699 3-ketoacyl-ACP synthase, putative similar
to 3-ketoacyl-ACP synthase [Cuphea pulcherrima]
gi|3800747|gb|AAC68860; identical to cDNA
beta-ketoacyl-ACP synthetase 2 nuclear gene for plastid
product GI:14582700
Length = 541
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 562 VPEGRHVSQHEVDAGEGDR-RSRYRARDCALLLGSLDDSMIVTVCLGEMSATYN*HNNKY 738
V G S+ V G R R R + C++ GS +VT CL T+ +NN
Sbjct: 23 VSHGGGDSRQAVALQSGGRSRRRRQLSKCSVASGSASIQALVTSCLDFGPCTHY-NNNNA 81
Query: 739 ISSLSNQNS 765
+SSL NS
Sbjct: 82 LSSLFGSNS 90
>At1g04750.1 68414.m00470 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana};
Length = 219
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/84 (20%), Positives = 39/84 (46%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
+++ ++LE + ++F ++YG + + + + QY +
Sbjct: 75 RQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYC--MDHPDEISKLA 132
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
+ Q+ +V+ +MM+NI+ VL RG
Sbjct: 133 KVKAQVSEVKGVMMENIEKVLDRG 156
>At2g32670.1 68415.m03994 synaptobrevin family protein similar to
vesicle-associated membrane protein 7 [Rattus
norvegicus] GI:9502258, SP|P51809 Synaptobrevin-like
protein 1 {Homo sapiens}; contains Pfam profile PF00957:
Synaptobrevin
Length = 285
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/84 (21%), Positives = 38/84 (45%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
+++ +LE + ++F ++YG T + + + QY +
Sbjct: 140 RQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYC--VDHPDEISKLA 197
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
+ Q+ +V+ +MM+NI+ VL RG
Sbjct: 198 KVKAQVTEVKGVMMENIEKVLDRG 221
>At1g02630.1 68414.m00213 equilibrative nucleoside transporter,
putative (ENT8) identical to putative equilibrative
nucleoside transporter ENT8 [Arabidopsis thaliana]
GI:28207664; contains similarity to SWISS-PROT:O54699
equilibrative nucleoside transporter 2 (Equilibrative
nitrobenzylmercaptopurine riboside-insensitive
nucleoside transporter, Equilibrative NBMPR-insensitive
nucleoside transporter, Nucleoside transporter, ei-type)
[Rattus norvegicus]; contains Pfam profile PF01733:
Nucleoside transporter
Length = 389
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -2
Query: 781 RVFAHSYFGLTATICICCCVN 719
R AHSYF +++TI +CC ++
Sbjct: 183 RTSAHSYFIVSSTILLCCFIS 203
>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 529
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 697 RDKP*LSWNHLENPEVKHNHEHDNGSGGHLHQHRLRV 587
R +P + N N NH H NG G H H H +V
Sbjct: 447 RGQPHQNQNQNNNHSHNQNHNH-NGRGNHHHHHHHQV 482
>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
profile PF05383: La domain
Length = 545
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 697 RDKP*LSWNHLENPEVKHNHEHDNGSGGHLHQHRLRV 587
R +P + N N NH H NG G H H H +V
Sbjct: 463 RGQPHQNQNQNNNHSHNQNHNH-NGRGNHHHHHHHQV 498
>At3g14320.1 68416.m01811 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 204
Score = 23.8 bits (49), Expect(2) = 8.0
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -2
Query: 784 NRVFAHSYFGLTATI--CICCCVN 719
N VFA +FG++A + CI C N
Sbjct: 15 NIVFAFFFFGISAVVVSCIIKCYN 38
Score = 22.6 bits (46), Expect(2) = 8.0
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -2
Query: 643 NHEHDNGSGGHL 608
+H+HDN + GH+
Sbjct: 43 DHDHDNNNDGHV 54
>At3g54300.1 68416.m06001 synaptobrevin family protein similar to
vesicle-associated membrane protein 7B (At VAMP7B),
Arabidopsis thaliana, EMBL:AF025333
Length = 240
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 432 SHLAPQLGDVQRIMMQNIDDVLQRG 506
S L Q+ +V+ IMM NI+ VL RG
Sbjct: 151 SKLKAQITEVKGIMMDNIEKVLDRG 175
>At2g33120.1 68415.m04060 synaptobrevin-related protein /
vesicle-associated membrane protein 722 (VAMP722) (SAR1)
identical to r to Vesicle-associated membrane protein
722 (AtVAMP722) Synaptobrevin-related protein 1
(SP:P47192) {Arabidopsis thaliana}; identical to cDNA
synaptobrevin-related protein (SAR1) GI:600709
Length = 221
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/84 (20%), Positives = 38/84 (45%)
Frame = +3
Query: 255 KRLAFNYLEEIAQEFFQQYGHRLNTVTRPYTFIEFDTCMQRTRKQYAEXXXXXXXXXXXS 434
+++ +LE + ++F ++YG + + + + QY +
Sbjct: 75 RQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYC--MDHPDEISKLA 132
Query: 435 HLAPQLGDVQRIMMQNIDDVLQRG 506
+ Q+ +V+ +MM+NI+ VL RG
Sbjct: 133 KVKAQVSEVKGVMMENIEKVLDRG 156
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,276,718
Number of Sequences: 28952
Number of extensions: 259212
Number of successful extensions: 833
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1892353600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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