Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1115
         (642 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052046-1|AAK93470.1|  603|Drosophila melanogaster LP06581p pro...    29   4.1  
AE013599-775|AAS64890.1|  602|Drosophila melanogaster CG8083-PB,...    29   4.1  
AE013599-774|AAS64889.1|  603|Drosophila melanogaster CG8083-PC,...    29   4.1  
AE013599-773|AAF58997.1|  603|Drosophila melanogaster CG8083-PA,...    29   4.1  
BT022615-1|AAY55031.1|  164|Drosophila melanogaster IP07759p pro...    29   5.4  
BT022471-1|AAY54887.1|  186|Drosophila melanogaster IP07959p pro...    29   5.4  
AE014296-2885|AAF49359.1|  199|Drosophila melanogaster CG13725-P...    29   5.4  

>AY052046-1|AAK93470.1|  603|Drosophila melanogaster LP06581p
           protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 626 IQIDFIYYLIYKPVIENQTRKLILRNF-KHFHNFS*VKLI 510
           I +   YY ++KP++ +   +  ++ F K +HNFS  +++
Sbjct: 114 IYLGLFYYYVFKPMVGHSLHRNYIKPFSKKWHNFSRTRVV 153


>AE013599-775|AAS64890.1|  602|Drosophila melanogaster CG8083-PB,
           isoform B protein.
          Length = 602

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 626 IQIDFIYYLIYKPVIENQTRKLILRNF-KHFHNFS*VKLI 510
           I +   YY ++KP++ +   +  ++ F K +HNFS  +++
Sbjct: 113 IYLGLFYYYVFKPMVGHSLHRNYIKPFSKKWHNFSRTRVV 152


>AE013599-774|AAS64889.1|  603|Drosophila melanogaster CG8083-PC,
           isoform C protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 626 IQIDFIYYLIYKPVIENQTRKLILRNF-KHFHNFS*VKLI 510
           I +   YY ++KP++ +   +  ++ F K +HNFS  +++
Sbjct: 114 IYLGLFYYYVFKPMVGHSLHRNYIKPFSKKWHNFSRTRVV 153


>AE013599-773|AAF58997.1|  603|Drosophila melanogaster CG8083-PA,
           isoform A protein.
          Length = 603

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 626 IQIDFIYYLIYKPVIENQTRKLILRNF-KHFHNFS*VKLI 510
           I +   YY ++KP++ +   +  ++ F K +HNFS  +++
Sbjct: 114 IYLGLFYYYVFKPMVGHSLHRNYIKPFSKKWHNFSRTRVV 153


>BT022615-1|AAY55031.1|  164|Drosophila melanogaster IP07759p
           protein.
          Length = 164

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 244 PIIYVQSSYCRLVTFAFQASISKHRYFDSGVDD 146
           PI YV+  YCR +     AS+ +  +  S +DD
Sbjct: 60  PISYVRKRYCRFLVMNLLASVDRLIHHHSHIDD 92


>BT022471-1|AAY54887.1|  186|Drosophila melanogaster IP07959p
           protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 244 PIIYVQSSYCRLVTFAFQASISKHRYFDSGVDD 146
           PI YV+  YCR +     AS+ +  +  S +DD
Sbjct: 82  PISYVRKRYCRFLVMNLLASVDRLIHHHSHIDD 114


>AE014296-2885|AAF49359.1|  199|Drosophila melanogaster CG13725-PA
           protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 244 PIIYVQSSYCRLVTFAFQASISKHRYFDSGVDD 146
           PI YV+  YCR +     AS+ +  +  S +DD
Sbjct: 95  PISYVRKRYCRFLVMNLLASVDRLIHHHSHIDD 127


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,406,163
Number of Sequences: 53049
Number of extensions: 292201
Number of successful extensions: 461
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)