Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1114
(756 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2; E... 151 2e-35
UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform; n=... 151 2e-35
UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38; Eukaryo... 150 4e-35
UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55; Eukar... 137 3e-31
UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein... 130 2e-30
UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S riboso... 118 1e-25
UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing ... 114 2e-24
UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillard... 113 6e-24
UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n... 108 1e-22
UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S riboso... 106 5e-22
UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9; Eukaryot... 98 2e-19
UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1; Encephal... 82 1e-14
UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12; Euryar... 63 6e-09
UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1; Methano... 63 8e-09
UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4; Pyrobac... 60 8e-08
UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2; Methanobact... 58 2e-07
UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5; Sulfolo... 55 2e-06
UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3; Thermop... 54 3e-06
UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga ... 54 5e-06
UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1; Th... 54 5e-06
UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4; Desulfu... 52 1e-05
UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_030011... 51 3e-05
UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1; Nanoarc... 49 1e-04
UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2; Euryarc... 47 6e-04
UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2; Bigelowi... 46 0.001
UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmenta... 45 0.002
UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4; Euryarc... 45 0.002
UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1; Me... 44 0.003
UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3; Me... 43 0.009
UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1; Methanococc... 41 0.038
UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6; Halobac... 38 0.27
UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1; L... 37 0.47
UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n... 36 1.1
UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1... 35 1.9
UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium tu... 35 1.9
UniRef50_A7EFC4 Cluster: Putative uncharacterized protein; n=1; ... 35 1.9
UniRef50_A6SQK8 Cluster: Putative uncharacterized protein; n=1; ... 33 5.8
UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1; Picroph... 33 5.8
UniRef50_Q3W9H9 Cluster: Short-chain dehydrogenase/reductase SDR... 33 7.6
UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1; ... 33 7.6
UniRef50_Q18ED9 Cluster: Cell surface calcium-binding acidic-rep... 33 7.6
>UniRef50_UPI0000499069 Cluster: 40S ribosomal protein S4; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: 40S ribosomal
protein S4 - Entamoeba histolytica HM-1:IMSS
Length = 326
Score = 151 bits (365), Expect = 2e-35
Identities = 98/243 (40%), Positives = 128/243 (52%), Gaps = 11/243 (4%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARGP+ HLKRLNAP WML KLGG +AP+PS GPH ++ECLPL++ LRNRL YAL G E
Sbjct: 1 MARGPRHHLKRLNAPHHWMLSKLGGTFAPKPSHGPHGMKECLPLILILRNRLNYALNGRE 60
Query: 218 VL*IVKQRLIKVVGKXXXXXXXXXXXXXXXXXRRLMNCFD*SMMLRADSQSTVSPLRRLS 397
V IVK R IK+ GK R F +M + + P L+
Sbjct: 61 VTMIVKNRTIKIDGKIRTDTRYPVGFMDVLSIPRTKENF--RLMYNTKRRFCLVP---LT 115
Query: 398 TSCVKSSVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTFHPVRHCNYED---YGLHQV*VR 568
K + + + R+ T A I TH ++ +P D L +
Sbjct: 116 AEQAKFKLCKIEKRVLGT-----GAIPYIVTHDGRTIRYPHPELQANDTIKLNLETGKIV 170
Query: 569 ELV-YDHGRP*LGARGHIVSR-------ERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 724
+ V +D G + G+ + R E HPGSF+IVHIKD+ G+TF TRLNNVF+IGK
Sbjct: 171 DFVKFDIGNTAMMIGGNGMGRVGVIVKREVHPGSFEIVHIKDAKGNTFTTRLNNVFVIGK 230
Query: 725 GTK 733
GT+
Sbjct: 231 GTE 233
Score = 110 bits (264), Expect = 4e-23
Identities = 47/84 (55%), Positives = 63/84 (75%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GK+RTD YP GFMDV+SI +T E FRL+Y+ K RF + +T E+AK+KLCK+++ G
Sbjct: 74 GKIRTDTRYPVGFMDVLSIPRTKENFRLMYNTKRRFCLVPLTAEQAKFKLCKIEKRVLGT 133
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
+PY+VTHDGRTIRYP P ++ N
Sbjct: 134 GAIPYIVTHDGRTIRYPHPELQAN 157
Score = 48.8 bits (111), Expect = 1e-04
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P Q+ +I+L++ T KI+DF+KF+ GN M+ GG +GRVG
Sbjct: 152 PELQANDTIKLNLETGKIVDFVKFDIGNTAMMIGGNGMGRVG 193
>UniRef50_P62701 Cluster: 40S ribosomal protein S4, X isoform;
n=137; Eukaryota|Rep: 40S ribosomal protein S4, X
isoform - Homo sapiens (Human)
Length = 263
Score = 151 bits (365), Expect = 2e-35
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVRTD TYPAGFMDV+SI+KT E FRLIYD KGRF +HRITPEEAKYKLCKV+++ G
Sbjct: 74 GKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGT 133
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K +P+LVTHD RTIRYPDPLIKVN
Sbjct: 134 KGIPHLVTHDARTIRYPDPLIKVN 157
Score = 132 bits (318), Expect = 1e-29
Identities = 61/75 (81%), Positives = 66/75 (88%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 218 VL*IVKQRLIKVVGK 262
V I QR IK+ GK
Sbjct: 61 VKKICMQRFIKIDGK 75
Score = 73.7 bits (173), Expect = 4e-12
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +2
Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
LG G I +RERHPGSFD+VH+KD+ G++FATRL+N+F+IGKG K
Sbjct: 189 LGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNK 233
Score = 60.9 bits (141), Expect = 3e-08
Identities = 25/42 (59%), Positives = 33/42 (78%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P + +IQ+D+ T KI DFIKF++GNLCM+TGG NLGR+G
Sbjct: 152 PLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIG 193
>UniRef50_P41042 Cluster: 40S ribosomal protein S4; n=38;
Eukaryota|Rep: 40S ribosomal protein S4 - Drosophila
melanogaster (Fruit fly)
Length = 261
Score = 150 bits (363), Expect = 4e-35
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+ G
Sbjct: 74 GKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGA 133
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K VP+LVTHDGRTIRYPDPLI N
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIHAN 157
Score = 134 bits (325), Expect = 2e-30
Identities = 64/75 (85%), Positives = 67/75 (89%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARGPKKHLKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G E
Sbjct: 1 MARGPKKHLKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAE 60
Query: 218 VL*IVKQRLIKVVGK 262
V IV QRL+KV GK
Sbjct: 61 VTKIVMQRLVKVDGK 75
Score = 79.8 bits (188), Expect = 7e-14
Identities = 36/45 (80%), Positives = 38/45 (84%)
Frame = +2
Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
LG G +V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K
Sbjct: 189 LGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNK 233
Score = 68.5 bits (160), Expect = 2e-10
Identities = 30/43 (69%), Positives = 36/43 (83%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 617
P + S+Q+DIA+ KI D+IKF+SGNLCMITGGRNLGRVGT
Sbjct: 152 PLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGT 194
>UniRef50_P49204 Cluster: 40S ribosomal protein S4-2; n=55;
Eukaryota|Rep: 40S ribosomal protein S4-2 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 262
Score = 137 bits (331), Expect = 3e-31
Identities = 62/84 (73%), Positives = 69/84 (82%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G
Sbjct: 74 GKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQ 133
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K +PYL T+DGRTIRYPDPLIK N
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKPN 157
Score = 121 bits (291), Expect = 2e-26
Identities = 56/75 (74%), Positives = 64/75 (85%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 218 VL*IVKQRLIKVVGK 262
V+ I+ QR I+V GK
Sbjct: 61 VISILMQRHIQVDGK 75
Score = 66.5 bits (155), Expect = 7e-10
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +2
Query: 602 GARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
G G I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Score = 52.0 bits (119), Expect = 2e-05
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P + +I+LD+ KI++FIKF+ GN+ M+TGGRN GRVG
Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVG 193
>UniRef50_UPI000065EA48 Cluster: similar to 40S ribosomal protein
S4, X isoform (LOC126235), mRNA; n=1; Takifugu
rubripes|Rep: similar to 40S ribosomal protein S4, X
isoform (LOC126235), mRNA - Takifugu rubripes
Length = 291
Score = 130 bits (313), Expect = 5e-29
Identities = 60/74 (81%), Positives = 65/74 (87%)
Frame = +2
Query: 41 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 220
ARGPKKHLKR+ APK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYALTG+EV
Sbjct: 2 ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEV 61
Query: 221 L*IVKQRLIKVVGK 262
I QR IK+ GK
Sbjct: 62 KKICMQRFIKIDGK 75
Score = 86.6 bits (205), Expect(2) = 2e-30
Identities = 39/47 (82%), Positives = 42/47 (89%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 396
GKVRTD TYP GFMDV+SI+KT E FRLIYDVKGRFT+HRIT EEAK
Sbjct: 74 GKVRTDITYPTGFMDVISIDKTGEHFRLIYDVKGRFTVHRITAEEAK 120
Score = 77.0 bits (181), Expect = 5e-13
Identities = 32/45 (71%), Positives = 40/45 (88%)
Frame = +2
Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
LG G I +RERHPGSFD+VH+KDSTG++FATRL+N+F+IGKG K
Sbjct: 221 LGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNK 265
Score = 68.9 bits (161), Expect(2) = 2e-30
Identities = 28/38 (73%), Positives = 33/38 (86%)
Frame = +1
Query: 394 KYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVN 507
+YKLCKVK++ G K +P+LVTHD RTIRYPDPLIKVN
Sbjct: 152 QYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPLIKVN 189
Score = 55.2 bits (127), Expect = 2e-06
Identities = 21/42 (50%), Positives = 32/42 (76%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P + ++++D+ T KI DFIKF++ N+CM+TGG NLGR+G
Sbjct: 184 PLIKVNDTVRIDLDTGKITDFIKFDTSNMCMVTGGANLGRIG 225
>UniRef50_UPI00005A08FF Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=3; Eutheria|Rep: PREDICTED:
similar to 40S ribosomal protein S4, X isoform - Canis
familiaris
Length = 240
Score = 118 bits (285), Expect = 1e-25
Identities = 55/75 (73%), Positives = 61/75 (81%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MA P+KHLK + APK WMLDKL GV+AP PSTGPHKLRECLPL+IFLRNRLKYALTG+E
Sbjct: 1 MAHSPRKHLKHVAAPKHWMLDKLTGVFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDE 60
Query: 218 VL*IVKQRLIKVVGK 262
V I Q IK+ GK
Sbjct: 61 VKKIRMQHFIKMDGK 75
Score = 93.1 bits (221), Expect = 7e-18
Identities = 39/54 (72%), Positives = 46/54 (85%)
Frame = +1
Query: 346 DVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVN 507
D KGRF +HRITPEEAKYKL KV+++ G K +P+LVTHD RTIRYPDPLIK+N
Sbjct: 76 DTKGRFAVHRITPEEAKYKLGKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKMN 129
Score = 69.7 bits (163), Expect = 7e-11
Identities = 28/43 (65%), Positives = 37/43 (86%)
Frame = +2
Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKG 727
LG G I +RE HPGSFD+VH+KD+ G++FATRL+N+F+IGKG
Sbjct: 161 LGRIGVITNRENHPGSFDVVHVKDANGNSFATRLSNIFVIGKG 203
Score = 59.7 bits (138), Expect = 8e-08
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P + +IQ+D+ T KI DF KF++GNLCM+TGG NLGR+G
Sbjct: 124 PLIKMNDTIQIDLETGKITDFFKFDTGNLCMVTGGTNLGRIG 165
>UniRef50_UPI00006CBCC9 Cluster: Ribosomal family S4e containing
protein; n=1; Tetrahymena thermophila SB210|Rep:
Ribosomal family S4e containing protein - Tetrahymena
thermophila SB210
Length = 370
Score = 114 bits (275), Expect = 2e-24
Identities = 50/83 (60%), Positives = 62/83 (74%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVR D YP G MDVV IEKT++ FR++YD KGRF + ++ EEAKYKL KV A GP
Sbjct: 186 GKVRRDKGYPTGLMDVVRIEKTDQSFRILYDTKGRFVLKSLSKEEAKYKLLKVTAKAIGP 245
Query: 436 KNVPYLVTHDGRTIRYPDPLIKV 504
+PY+VTHD RTIR+P+P IK+
Sbjct: 246 NQIPYIVTHDSRTIRFPNPEIKI 268
Score = 65.3 bits (152), Expect = 2e-09
Identities = 45/105 (42%), Positives = 58/105 (55%), Gaps = 31/105 (29%)
Frame = +2
Query: 41 ARGPKKHLKRLNAPKAWMLDKLGG-------------------------VYAPRPSTGP- 142
ARGPKKHLKR+NAPK+WML+KLGG +Y + +T P
Sbjct: 83 ARGPKKHLKRINAPKSWMLNKLGGIWVITFFAFRLRKNDFITTIPKLKFIYFKKQATRPS 142
Query: 143 ---HKLRECLPLVIFLRNRLKYALTGNEVL*IV--KQRLIKVVGK 262
HKLRE LPL + L+ RL YAL G +V I+ K++ + V GK
Sbjct: 143 QGPHKLRESLPLSVLLKERLNYALNGRDVTLILNDKEQNVFVDGK 187
Score = 58.0 bits (134), Expect = 2e-07
Identities = 24/45 (53%), Positives = 33/45 (73%)
Frame = +2
Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
+G G I E+H GSFDI H+KD+ G+ FATRL N+F++G+G K
Sbjct: 301 IGRVGIIQHIEKHQGSFDICHVKDAKGNAFATRLGNIFVLGQGKK 345
Score = 39.9 bits (89), Expect = 0.066
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 510 SIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
+++ D+ KI +F ESGN+C I G N+GRVG
Sbjct: 271 TLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVG 305
>UniRef50_Q9XG32 Cluster: 40S ribosomal protein S4; n=1; Guillardia
theta|Rep: 40S ribosomal protein S4 - Guillardia theta
(Cryptomonas phi)
Length = 257
Score = 113 bits (271), Expect = 6e-24
Identities = 50/84 (59%), Positives = 65/84 (77%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVR D +PAG MDV+SI+ T E +R++YD G F +HRIT +E+ +KLCKV RV+ G
Sbjct: 74 GKVRADKNFPAGVMDVISIKTTKENYRVLYDNVGHFFLHRITIKESMFKLCKVIRVSIGS 133
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K +PY+VTHDGRTIR+P+ LIK N
Sbjct: 134 KGIPYIVTHDGRTIRFPNLLIKSN 157
Score = 95.9 bits (228), Expect = 1e-18
Identities = 44/75 (58%), Positives = 57/75 (76%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
M+RG KKH KRLNAPK W+L+KLGG++APR S+GPHK + +PLVI +RN+LKY+ E
Sbjct: 1 MSRGIKKHYKRLNAPKKWLLNKLGGIWAPRSSSGPHKKQNSIPLVIVIRNKLKYSTNQRE 60
Query: 218 VL*IVKQRLIKVVGK 262
L I+K+ I V GK
Sbjct: 61 SLNILKKNEIYVDGK 75
Score = 47.6 bits (108), Expect = 3e-04
Identities = 19/39 (48%), Positives = 28/39 (71%)
Frame = +3
Query: 498 QSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
+S SI LD+ K++DFIKF G+LC++ G N+GR+G
Sbjct: 155 KSNDSIVLDLLNNKVIDFIKFSIGSLCVVIKGSNIGRIG 193
Score = 40.3 bits (90), Expect = 0.050
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +2
Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
+G G ++ GS IV +KD G +F+T+ N+F+IGKGTK
Sbjct: 189 IGRIGVFINTIGGQGSDSIVCLKDFNGSSFSTQTKNLFVIGKGTK 233
>UniRef50_A2ECC6 Cluster: 40S ribosomal protein S4-C, putative; n=4;
Trichomonas vaginalis G3|Rep: 40S ribosomal protein
S4-C, putative - Trichomonas vaginalis G3
Length = 269
Score = 108 bits (260), Expect = 1e-22
Identities = 46/84 (54%), Positives = 62/84 (73%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVRT+ YP G MDV+ + K+NELFR+IYD KGRF +H I +EA +KL +V + G
Sbjct: 88 GKVRTNYRYPTGLMDVIELGKSNELFRIIYDCKGRFCVHHIEAKEASFKLLRVNQFKIGA 147
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K +P++VTHDGRTI Y DP ++V+
Sbjct: 148 KGIPHVVTHDGRTISYVDPSVRVH 171
Score = 102 bits (245), Expect = 8e-21
Identities = 52/84 (61%), Positives = 60/84 (71%)
Frame = +2
Query: 11 SFSI*YLSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNR 190
SFS L M R + HLKRL AP W+L K G +A PSTGPHKLRECLP+ IFLR+R
Sbjct: 6 SFSWSVLFLMPRCQRFHLKRLTAPHHWLLAKSAGKFASHPSTGPHKLRECLPINIFLRDR 65
Query: 191 LKYALTGNEVL*IVKQRLIKVVGK 262
LKYALT E + IVK+RL+KV GK
Sbjct: 66 LKYALTAKEAVAIVKRRLVKVDGK 89
Score = 49.2 bits (112), Expect = 1e-04
Identities = 22/42 (52%), Positives = 30/42 (71%)
Frame = +2
Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 724
+G G I E+ SFDIVH+KD++G FATR+ NVF+IG+
Sbjct: 203 VGRVGTIQKIEKQMASFDIVHLKDTSGAVFATRIMNVFVIGE 244
Score = 39.5 bits (88), Expect = 0.088
Identities = 16/43 (37%), Positives = 29/43 (67%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 617
P+ + +++ +I T ++ IKF+ G++ M+T G N+GRVGT
Sbjct: 166 PSVRVHDALKFNIKTGEVESVIKFKVGDVAMVTAGGNVGRVGT 208
>UniRef50_UPI0000D9EB72 Cluster: PREDICTED: similar to 40S ribosomal
protein S4, X isoform; n=1; Macaca mulatta|Rep:
PREDICTED: similar to 40S ribosomal protein S4, X
isoform - Macaca mulatta
Length = 244
Score = 106 bits (255), Expect = 5e-22
Identities = 47/84 (55%), Positives = 60/84 (71%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GK+RTD P MDV+SI+K E F LIY + RF +HRITPEE KYKLCK++++
Sbjct: 84 GKIRTDNNLPYWIMDVISIDKMGEDFCLIYGINRRFALHRITPEEVKYKLCKMRKIFVRA 143
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K +P+LV HD T+R+PD LIKVN
Sbjct: 144 KGIPHLVIHDIHTVRHPDSLIKVN 167
Score = 105 bits (253), Expect = 9e-22
Identities = 54/78 (69%), Positives = 62/78 (79%)
Frame = +2
Query: 29 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 208
++ +A GPK+HLKR+ A + WMLDKL GV+A RPSTGPHKLRECLP IFLRNRLKYALT
Sbjct: 9 ITAVAFGPKQHLKRVAALQHWMLDKLTGVFAARPSTGPHKLRECLP-HIFLRNRLKYALT 67
Query: 209 GNEVL*IVKQRLIKVVGK 262
G+EV I Q IKV GK
Sbjct: 68 GDEVKKICMQWFIKVDGK 85
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/35 (54%), Positives = 28/35 (80%)
Frame = +3
Query: 510 SIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
+IQ+D+ T KI +KF++GNLC++TGG N GR+G
Sbjct: 169 TIQIDLETGKITA-LKFDTGNLCLVTGGGNWGRIG 202
Score = 42.7 bits (96), Expect = 0.009
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = +2
Query: 602 GARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
G G I +RERHP SFD H+KD+ ++F+ +F+I KG K
Sbjct: 199 GRIGVITNRERHPVSFDTFHVKDANSNSFSI----IFVIDKGNK 238
>UniRef50_Q7KJQ3 Cluster: 40S ribosomal protein S4; n=9;
Eukaryota|Rep: 40S ribosomal protein S4 - Leishmania
major
Length = 273
Score = 98.3 bits (234), Expect = 2e-19
Identities = 45/67 (67%), Positives = 52/67 (77%)
Frame = +2
Query: 53 KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL*IV 232
KKHLKRL APK WML KL GV+APRP GPHKLRECLPL++ +RNRLKYAL E I+
Sbjct: 3 KKHLKRLYAPKDWMLSKLTGVFAPRPRPGPHKLRECLPLLVIIRNRLKYALNAREGEMIL 62
Query: 233 KQRLIKV 253
+Q L+ V
Sbjct: 63 RQGLVHV 69
Score = 93.5 bits (222), Expect = 5e-18
Identities = 44/76 (57%), Positives = 51/76 (67%)
Frame = +1
Query: 265 RTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNV 444
R D YPAGFMDVV I KT + FRL+YDVKGRF + ++ EA+ KL KV + T V
Sbjct: 74 RRDGKYPAGFMDVVEIPKTGDRFRLMYDVKGRFALVNLSEAEAQIKLMKVVNLYTATGRV 133
Query: 445 PYLVTHDGRTIRYPDP 492
P VTHDG IRYPDP
Sbjct: 134 PVAVTHDGHRIRYPDP 149
Score = 54.0 bits (124), Expect = 4e-06
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = +2
Query: 602 GARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGK 724
G G IV E HPG+F+I H+KD++G FATR N+F+IGK
Sbjct: 187 GRIGEIVKVECHPGAFNIAHLKDASGAEFATRAANIFVIGK 227
>UniRef50_Q8SRB9 Cluster: 40S RIBOSOMAL PROTEIN S4; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S4 -
Encephalitozoon cuniculi
Length = 268
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/81 (48%), Positives = 56/81 (69%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
G+VRT+ +P G DVVSIEKT E FR++Y+V +F +HRI+ EEA Y+L KV +
Sbjct: 74 GRVRTNSHFPVGLFDVVSIEKTGEHFRVLYNVHKKFHLHRISSEEASYRLTKVTKKYEN- 132
Query: 436 KNVPYLVTHDGRTIRYPDPLI 498
+ +PY+V+ G +IR+ DP I
Sbjct: 133 QGIPYIVSSCGLSIRFCDPAI 153
Score = 75.4 bits (177), Expect = 1e-12
Identities = 35/75 (46%), Positives = 48/75 (64%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
M G + HLKR APK+WMLDK GG +A P++GPHK EC+PL + L+YA E
Sbjct: 1 MPTGHRDHLKRKTAPKSWMLDKQGGTFALMPASGPHKKTECIPLGYLISRFLRYASNFKE 60
Query: 218 VL*IVKQRLIKVVGK 262
+ I+ ++ IKV G+
Sbjct: 61 LSIILAEKNIKVNGR 75
>UniRef50_P62428 Cluster: 30S ribosomal protein S4e; n=12;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanococcus maripaludis
Length = 244
Score = 63.3 bits (147), Expect = 6e-09
Identities = 30/72 (41%), Positives = 43/72 (59%)
Frame = +2
Query: 44 RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 223
+GP+KHLKRL AP W L + + RPS GPH + + LPL++ +R+ LKYA E
Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAK 63
Query: 224 *IVKQRLIKVVG 259
I++ I + G
Sbjct: 64 KIIQTGKILIDG 75
Score = 44.0 bits (99), Expect = 0.004
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKV--KRVAT 429
G R + +PAG MDV+SI + +E + +++D GR ++ + ++ KLCK+ K V
Sbjct: 75 GLKRKEYKHPAGLMDVLSIPEMDETYLVLFDESGRISLKK--TDKTDVKLCKIVNKTVVK 132
Query: 430 GPKNVPYLVTHDGR 471
G N+ L HDGR
Sbjct: 133 G-GNI-QLNLHDGR 144
>UniRef50_Q8TW18 Cluster: 30S ribosomal protein S4e; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S4e -
Methanopyrus kandleri
Length = 260
Score = 62.9 bits (146), Expect = 8e-09
Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +2
Query: 47 GPKKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 223
GPK+H+KRL AP AW + K GG +APRP GPH + +PL+I +R+ L YA E
Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREAR 66
Query: 224 *IVKQRLIKVVG 259
I+ + I V G
Sbjct: 67 KIITRGEIYVDG 78
Score = 54.0 bits (124), Expect = 4e-06
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
G VR +P +P G MDVV I +T + +R++ + R + I+ EEA+ K+C++K
Sbjct: 78 GVVRKEPKFPVGIMDVVEIPRTGDRYRVVMNEHHRLDVVPISEEEARVKVCRIKNKTYVR 137
Query: 436 KNVPYLVTHDGRT--IRYPDP 492
+ HDG+ + DP
Sbjct: 138 GGNLQITMHDGKNWLVEIEDP 158
>UniRef50_Q8ZTD3 Cluster: 30S ribosomal protein S4e; n=4;
Pyrobaculum|Rep: 30S ribosomal protein S4e - Pyrobaculum
aerophilum
Length = 238
Score = 59.7 bits (138), Expect = 8e-08
Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 59 HLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL*IVK 235
HL+R AP W + K GGV+ RPS GPH L LPL + +R+ LKYA T +E I+
Sbjct: 3 HLRRTLAPAWWPIPRKKGGVWVVRPSPGPHSLAYSLPLALIIRDVLKYAKTMHEARYIIS 62
Query: 236 QRLIKVVG 259
+ +KV G
Sbjct: 63 RGYVKVDG 70
Score = 48.0 bits (109), Expect = 3e-04
Identities = 26/74 (35%), Positives = 38/74 (51%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
G VR D +P G MDV+ I T E++R++ D + + I+ EEA KL +V+
Sbjct: 70 GVVRRDYKFPVGLMDVIEIVPTGEVYRVVPDADKYYNLLPISTEEAALKLLRVEGKTMVK 129
Query: 436 KNVPYLVTHDGRTI 477
L HDGR +
Sbjct: 130 GGRIQLHFHDGRNL 143
>UniRef50_A5UL76 Cluster: Ribosomal protein S4e; n=2;
Methanobacteriaceae|Rep: Ribosomal protein S4e -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 242
Score = 58.4 bits (135), Expect = 2e-07
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
G+V D +P GFMD++ I KT E++R++ D KGR +++I EE KLCK+ +T
Sbjct: 75 GRVIKDYKFPVGFMDIIEIPKTGEVYRVLLDKKGRLQLNKI--EENDSKLCKIVNKSTIK 132
Query: 436 KNVPYLVTHDGRTI 477
+ HDG+ +
Sbjct: 133 GGKIQVNLHDGKNV 146
Score = 46.8 bits (106), Expect = 6e-04
Identities = 23/72 (31%), Positives = 34/72 (47%)
Frame = +2
Query: 47 GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL* 226
G +KHLK APK W + + +PS G H + L L + +R+ LK A E
Sbjct: 5 GSRKHLKTYKAPKTWPIHPKEDTWTVKPSAGSHSIENSLSLTLVIRDILKLADNSREAKR 64
Query: 227 IVKQRLIKVVGK 262
I+ + V G+
Sbjct: 65 IINSGNVLVDGR 76
>UniRef50_O05634 Cluster: 30S ribosomal protein S4e; n=5;
Sulfolobaceae|Rep: 30S ribosomal protein S4e -
Sulfolobus acidocaldarius
Length = 244
Score = 54.8 bits (126), Expect = 2e-06
Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVR D YP G MDVV I + R+I D T I+ E+AKYK ++ T
Sbjct: 69 GKVRRDYKYPVGLMDVVEIPSADLRVRIIPDNVRYLTTINISREDAKYKFVRIMNKTTLK 128
Query: 436 KNVPYLVTHDGRTIRYP-DPLIKVNVPSS*TLQL 534
V L DGR I + L + N+P+ TL++
Sbjct: 129 SGVLQLNLEDGRNILLKGEELSQYNLPTLTTLKI 162
Score = 37.5 bits (83), Expect = 0.35
Identities = 23/68 (33%), Positives = 32/68 (47%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL*IVKQ 238
H+ R AP + K + R GPHK++E +PL I L+ LK T E I+
Sbjct: 3 HITRFEAPWFLKVGKKEYKWIIRSRAGPHKIQESVPLAILLKYYLKAVDTTREAKRIIFD 62
Query: 239 RLIKVVGK 262
+ V GK
Sbjct: 63 GKVLVDGK 70
>UniRef50_Q56230 Cluster: 30S ribosomal protein S4e; n=3;
Thermoplasma|Rep: 30S ribosomal protein S4e -
Thermoplasma acidophilum
Length = 235
Score = 54.4 bits (125), Expect = 3e-06
Identities = 31/83 (37%), Positives = 42/83 (50%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GK + + GFMDV+ I E +R++Y+ +G + + T E A KL KV+ P
Sbjct: 70 GKTVREKKFAVGFMDVIEIN--GESYRVVYNDQGALVLMKETKERASMKLLKVRSKVIAP 127
Query: 436 KNVPYLVTHDGRTIRYPDPLIKV 504
N L THDGRT D KV
Sbjct: 128 GNRIQLGTHDGRTFITDDKSKKV 150
>UniRef50_A3H986 Cluster: Ribosomal protein S4E; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S4E -
Caldivirga maquilingensis IC-167
Length = 237
Score = 53.6 bits (123), Expect = 5e-06
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL*IVKQ 238
HL+R +P+ W +++ G ++ +PS GPH +PL + LR+ YA T E I+ +
Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGK 62
Query: 239 RLIKVVGK 262
+KV GK
Sbjct: 63 GYVKVDGK 70
Score = 51.6 bits (118), Expect = 2e-05
Identities = 28/74 (37%), Positives = 36/74 (48%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVR D YP G MDV+ + NE +R+I D RI EA K+C+++
Sbjct: 69 GKVRRDYKYPVGLMDVIELTPINEYYRIIPDPVNFLRPIRIDKSEAGVKVCRIEDKTMVK 128
Query: 436 KNVPYLVTHDGRTI 477
L HDGR I
Sbjct: 129 AGKIQLNLHDGRNI 142
>UniRef50_A1RWS3 Cluster: Ribosomal protein S4E, central; n=1;
Thermofilum pendens Hrk 5|Rep: Ribosomal protein S4E,
central - Thermofilum pendens (strain Hrk 5)
Length = 251
Score = 53.6 bits (123), Expect = 5e-06
Identities = 27/78 (34%), Positives = 42/78 (53%)
Frame = +2
Query: 29 LSNMARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALT 208
+ +G +HL+R AP W + + V+ +PS GPH L +P+ I LR+ YA T
Sbjct: 1 MGRKVKGSLRHLRRSVAPPFWPIKRKEYVWTVKPSPGPHSLLSSIPIGIVLRDVFGYAKT 60
Query: 209 GNEVL*IVKQRLIKVVGK 262
E I+ R+I+V G+
Sbjct: 61 MKEARRILASRVIEVDGR 78
Score = 52.8 bits (121), Expect = 9e-06
Identities = 26/74 (35%), Positives = 38/74 (51%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
G+V TD +P G MDV+ I + +R++ D + I PEEA YKL +++R T
Sbjct: 77 GRVVTDYKFPVGLMDVLHIIPEEKYYRVVPDPARKLRFVEIKPEEAGYKLAQIRRKMTVK 136
Query: 436 KNVPYLVTHDGRTI 477
HDGR +
Sbjct: 137 NGDLQFTLHDGRNV 150
>UniRef50_Q9YF85 Cluster: 30S ribosomal protein S4e; n=4;
Desulfurococcales|Rep: 30S ribosomal protein S4e -
Aeropyrum pernix
Length = 253
Score = 52.4 bits (120), Expect = 1e-05
Identities = 33/82 (40%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLI-YDVKGRFTIHRITPEEAKYKLCKVKRVATG 432
G VR D +P GFMDV+ + T E FR++ Y VK F +H I EE K +++ T
Sbjct: 75 GVVRKDYKFPVGFMDVIEVVDTGEKFRMLPYPVK-FFKLHPIPEEEGDLKPVRIENKTTV 133
Query: 433 PKNVPYLVTHDGRTI--RYPDP 492
L HDGR I R DP
Sbjct: 134 KGGHVQLNLHDGRNILVRVKDP 155
Score = 50.0 bits (114), Expect = 6e-05
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +2
Query: 38 MAR-GPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGN 214
MAR G ++ LK L AP+ W + + +A +P GPH + LPL++ +RN L YA T
Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAR 60
Query: 215 EVL*IVKQRLIKVVG 259
E ++ + +V G
Sbjct: 61 EARKLISEGHFRVDG 75
Score = 37.5 bits (83), Expect = 0.35
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = +3
Query: 468 PHHPLSRPTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P +P+ Y++ ++ + + +I IKF G + +I GGRN+GRVG
Sbjct: 155 PRNPVE-DVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVG 202
>UniRef50_UPI000038E22A Cluster: hypothetical protein Faci_03001139;
n=1; Ferroplasma acidarmanus fer1|Rep: hypothetical
protein Faci_03001139 - Ferroplasma acidarmanus fer1
Length = 241
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATG 432
G++ D +P GFMDV+SI+ + ++YD KG+ I + P KL K VK+ G
Sbjct: 71 GRIVKDRRFPVGFMDVLSIDTLENDYIIVYDRKGKLVIRQNAPGNKGLKLFKVVKKTIIG 130
Query: 433 PKNVPYLVTHDGRTI 477
+ L HDG+TI
Sbjct: 131 TGKI-QLGFHDGKTI 144
>UniRef50_P62429 Cluster: 30S ribosomal protein S4e; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S4e -
Nanoarchaeum equitans
Length = 234
Score = 48.8 bits (111), Expect = 1e-04
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCK-VKRVATG 432
G+ D +P G DV++I + NE +R++ D +G+ + +I EEA K K +++V+
Sbjct: 75 GRPIKDYKFPVGLFDVLAIPEINEYYRVLLDERGKLYLKKIDKEEANIKYGKIIRKVSVR 134
Query: 433 PKNVPYLVTHDGRT 474
+ Y +T DGRT
Sbjct: 135 GGKIQYTLT-DGRT 147
Score = 42.7 bits (96), Expect = 0.009
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +2
Query: 53 KKHLKRLNAPKAWMLD-KLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL*I 229
K+HL+ L P+ W + K G + +PS GPH +P+ ++LR+ L A EV +
Sbjct: 6 KRHLRSLAVPRTWPVPRKSRGYWIVKPSPGPHSKEFAMPIAVWLRDYLGLAENMREVRYL 65
Query: 230 VKQRLIKVVGK 262
+ + V G+
Sbjct: 66 LNNGKVLVDGR 76
>UniRef50_Q0W1X6 Cluster: 30S ribosomal protein S4E; n=2;
Euryarchaeota|Rep: 30S ribosomal protein S4E -
Uncultured methanogenic archaeon RC-I
Length = 234
Score = 46.8 bits (106), Expect = 6e-04
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL*IVKQ 238
HLKR+ AP+ W + + + +P G H +PLV+ LR+ LK A +E+ I+ +
Sbjct: 5 HLKRVAAPRTWPITRKTSKWVAKPMPGAHSEERGMPLVVVLRDLLKVADNTSEIKKILHE 64
Query: 239 RLIKVVGK 262
+ V GK
Sbjct: 65 GKVLVDGK 72
Score = 44.4 bits (100), Expect = 0.003
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVR D Y G D +SI N +R++ + G+F H + +A K+CK+
Sbjct: 71 GKVRKDYRYTVGMFDTISIPAINANYRVVIGMDGKF--HLVPVTDASAKICKIVNKTALR 128
Query: 436 KNVPYLVTHDGRTI 477
L HDG T+
Sbjct: 129 GGKIQLNLHDGTTM 142
>UniRef50_Q40941 Cluster: 40S ribosomal protein S4; n=2;
Bigelowiella natans|Rep: 40S ribosomal protein S4 -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 242
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GK +P MD +S N+ +R++ G+ T++ I E K+CKV ++
Sbjct: 74 GKKCLSHKFPISLMDTISFPLANKHYRVLLSKAGKLTVYEINQNEKDLKICKVIKIINAS 133
Query: 436 KNVPYLVTHDGRTIRYPDPLIKV 504
++T D R ++ IKV
Sbjct: 134 SKNKIIITDDLRELKINYAKIKV 156
Score = 37.5 bits (83), Expect = 0.35
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MA+G KKH KR+++ K G++ + S+GPH + + L+ ++ A E
Sbjct: 1 MAKGIKKHQKRISSNTMIKYKKKLGIFNTKISSGPHSKVKSVSLLNIIKKFFHLADNNQE 60
Query: 218 VL*IVKQRLIKVVGK 262
+VK + V GK
Sbjct: 61 AQKVVKTGFLYVNGK 75
>UniRef50_Q673R6 Cluster: Ribosomal protein S4; n=2; environmental
samples|Rep: Ribosomal protein S4 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 232
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/78 (33%), Positives = 39/78 (50%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
G++ TD G MDV+++ + + FR I DV G+ I+ + A KLC+V +T
Sbjct: 71 GRIETDLGRGVGLMDVLTVGEDS--FRCILDVNGKLRYRSISDKAAASKLCRVMGKSTIT 128
Query: 436 KNVPYLVTHDGRTIRYPD 489
+ HDGR I D
Sbjct: 129 DGKTQIHLHDGRNILVSD 146
Score = 44.8 bits (101), Expect = 0.002
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL*IVKQ 238
H+KRL P++W L + ++ +P+ G H C+PL + LR+ L A E ++
Sbjct: 5 HMKRLTMPRSWPLTRKTDIWVQKPNPGGHSDEMCMPLGVILRDVLDLAHNLREAKRMLAT 64
Query: 239 RLIKVVGK 262
R + V G+
Sbjct: 65 RQVLVDGR 72
>UniRef50_Q8PV38 Cluster: 30S ribosomal protein S4e; n=4;
Euryarchaeota|Rep: 30S ribosomal protein S4e -
Methanosarcina mazei (Methanosarcina frisia)
Length = 235
Score = 45.2 bits (102), Expect = 0.002
Identities = 23/74 (31%), Positives = 37/74 (50%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
G R D +P G DV+++ NE +R++ D KGR ++++ E KLC++ T
Sbjct: 69 GISRKDLRFPVGLFDVITLPLVNEAYRMLQDEKGRLVLYKLN-ETNVNKLCRINNKTTVK 127
Query: 436 KNVPYLVTHDGRTI 477
L +DG I
Sbjct: 128 GGKIQLNLNDGTNI 141
Score = 40.7 bits (91), Expect = 0.038
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL*IVKQ 238
H KRL+ PK+W + + G + GPH LPL + +R+ LK E I+ +
Sbjct: 3 HQKRLSVPKSWKVGRKGNKWISTTRPGPHSQARSLPLGLIIRDVLKLVDNNREGKRILSE 62
Query: 239 RLIKVVG 259
+ V G
Sbjct: 63 GKVLVDG 69
Score = 36.7 bits (81), Expect = 0.62
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 495 YQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTSCPARDI 638
Y ++ S+ L I ++ +KFE GNL M+ GG++ G G R++
Sbjct: 147 YGTKDSLILSIPDKHVVKHLKFEVGNLAMVIGGQHSGETGKIMEIREV 194
>UniRef50_A2SPL4 Cluster: Ribosomal protein S4E, central; n=1;
Methanocorpusculum labreanum Z|Rep: Ribosomal protein
S4E, central - Methanocorpusculum labreanum (strain ATCC
43576 / DSM 4855 / Z)
Length = 239
Score = 44.4 bits (100), Expect = 0.003
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = +2
Query: 65 KRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL*IVKQRL 244
KR+ AP AW + + Y S+GPH LP+ I+LR+ +++AL EV I+ R
Sbjct: 5 KRMTAPDAWQIARKESKYVVSTSSGPHD-GSALPIGIWLRDHMQFALNTKEVRKILHDRQ 63
Query: 245 IKVVG 259
+ + G
Sbjct: 64 VLLNG 68
Score = 34.7 bits (76), Expect = 2.5
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 429
G + TD D++S K ++ + ++ D KGR + I+ + AK +L KV T
Sbjct: 68 GHIVTDEHIGIDVFDIISFPKIDKHYMILVDEKGRHNEYEISADAAKLQLVKVANKTT 125
>UniRef50_A3CT09 Cluster: Ribosomal protein S4E, central; n=3;
Methanomicrobiales|Rep: Ribosomal protein S4E, central -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 242
Score = 42.7 bits (96), Expect = 0.009
Identities = 21/58 (36%), Positives = 29/58 (50%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVAT 429
G+ D G D+VSI K + +R+ DVKG I E AK +LCK++ T
Sbjct: 69 GRACKDSRMGLGVFDIVSIPKLGKHYRIQLDVKGNLVAIEIPAESAKTRLCKIRNKTT 126
Score = 41.9 bits (94), Expect = 0.016
Identities = 24/69 (34%), Positives = 38/69 (55%)
Frame = +2
Query: 56 KHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL*IVK 235
K+LKRL AP +W + K + + + GPH LP+ ++LR + A +EV I+
Sbjct: 3 KYLKRLVAPGSWHIPKKVQKFVMKTAPGPHN-AGALPVGVWLREHIGLAQNASEVKKILH 61
Query: 236 QRLIKVVGK 262
QR + V G+
Sbjct: 62 QRDVLVNGR 70
Score = 33.1 bits (72), Expect = 7.6
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +3
Query: 480 LSRPTYQSQRSIQLDIATT-----KIMDFIKFESGNLCMITGGRNLGRVG 614
L+ TY+++ S+ + + T +I+D + GN+ MI GG++ G+VG
Sbjct: 143 LADNTYKAKDSVVVTLGTDGEDRFRIVDHFPYAEGNVAMIVGGKHSGKVG 192
>UniRef50_Q12ZT9 Cluster: Ribosomal protein S4E; n=1;
Methanococcoides burtonii DSM 6242|Rep: Ribosomal
protein S4E - Methanococcoides burtonii (strain DSM
6242)
Length = 236
Score = 40.7 bits (91), Expect = 0.038
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +3
Query: 495 YQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 617
Y ++ SI L + K++ IK+E GNL MI GG + G VG+
Sbjct: 148 YNTKDSIILSVPDKKVVKHIKYEVGNLAMIVGGSHAGEVGS 188
Score = 39.9 bits (89), Expect = 0.066
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRL 193
H KR++ PK+W + K + GPH + +PL + LR+ L
Sbjct: 4 HQKRISVPKSWQISKKSNKWITSTRPGPHNRLQSIPLAVILRDML 48
Score = 38.3 bits (85), Expect = 0.20
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVK 417
G R D +P G MD+++I N +R++ D K R ++++ A KLC+++
Sbjct: 70 GVARKDLRFPVGLMDIITIPLNNVEYRVMLDGKSRLVLNKLDGTGAD-KLCRIE 122
>UniRef50_P22510 Cluster: 30S ribosomal protein S4E; n=6;
Halobacteriaceae|Rep: 30S ribosomal protein S4E -
Haloarcula marismortui (Halobacterium marismortui)
Length = 234
Score = 37.9 bits (84), Expect = 0.27
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +2
Query: 59 HLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL*IVKQ 238
H KRL+ P +W +++ + + GPH +PL+I LR+ L YA E + +
Sbjct: 4 HQKRLSVPNSWPVERKTATFTVKAGAGPHG-ESGVPLLIVLRDVLGYADNRKEARYALNE 62
Query: 239 RLIKVVGK 262
+ + GK
Sbjct: 63 DNVLINGK 70
>UniRef50_Q890E3 Cluster: Acetyltransferase (GNAT) family; n=1;
Lactobacillus plantarum|Rep: Acetyltransferase (GNAT)
family - Lactobacillus plantarum
Length = 163
Score = 37.1 bits (82), Expect = 0.47
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +2
Query: 416 SVWRPDLRMFRTW*RMMAAPSAIQTHLSKSTFHPVRHCNYEDYG-LHQV*VRELVYDHG 589
+ WRP+ R W M+ A +A + TF P RH NYE +G L+ + V + HG
Sbjct: 46 ATWRPE----RRWQNMLLAMTADGEVVGVCTFGPARHANYEGWGELYSLYVHPNYHHHG 100
>UniRef50_Q00TF1 Cluster: Chromosome 17 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 17 contig 1, DNA
sequence - Ostreococcus tauri
Length = 197
Score = 35.9 bits (79), Expect = 1.1
Identities = 20/47 (42%), Positives = 26/47 (55%)
Frame = -3
Query: 751 GSEMYALRALADYEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDVP 611
G + L A D EHV + R + ++ GVL VHN EG + LA D P
Sbjct: 42 GKRDHRLVARTDGEHVRRARRKLLTGGVLQVHNFEGTDVLLAALDHP 88
Score = 33.5 bits (73), Expect = 5.8
Identities = 20/67 (29%), Positives = 35/67 (52%)
Frame = -1
Query: 498 DKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*SKQFIS 319
D + + +GAA+++ R+ L QLVL D V ES+L ++D + FI+
Sbjct: 127 DHGIRVTNGAAVVQTDARHALVPELLAPHLAQLVLRFDSLDAVHNESSLGVVDEPEVFIA 186
Query: 318 LLN*DNI 298
L + D++
Sbjct: 187 LFDGDDV 193
>UniRef50_UPI0000E814A8 Cluster: PREDICTED: similar to MEGF6; n=1;
Gallus gallus|Rep: PREDICTED: similar to MEGF6 - Gallus
gallus
Length = 1119
Score = 35.1 bits (77), Expect = 1.9
Identities = 21/47 (44%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Frame = -2
Query: 728 CPCRL*TRCSTSWRRCVPWSP*CAQ----CRR-SRDVSRGTRCAHAP 603
C CR R RRC PWSP CAQ C + RDV RC P
Sbjct: 144 CRCRRQYRLREDGRRCAPWSP-CAQRNGGCMQLCRDVQGAARCECRP 189
>UniRef50_Q7U147 Cluster: PROBABLE OXIDASE; n=7; Mycobacterium
tuberculosis complex|Rep: PROBABLE OXIDASE -
Mycobacterium bovis
Length = 504
Score = 35.1 bits (77), Expect = 1.9
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = -2
Query: 170 PGASTRATCGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSI 24
PG RAT GD + VSV T+R PTS+ W ++ N G P +I
Sbjct: 93 PGPLIRATVGDEIVVSV-TNRLGDPTSVHWHGIALRNDMDGTEPATANI 140
>UniRef50_A7EFC4 Cluster: Putative uncharacterized protein; n=1;
Sclerotinia sclerotiorum 1980|Rep: Putative
uncharacterized protein - Sclerotinia sclerotiorum 1980
Length = 695
Score = 35.1 bits (77), Expect = 1.9
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = -1
Query: 312 N*DNIHKSSRISRVSPNFPTTFMRRCFTI*RTSFPVKAYFRRFLRK----ITRGKHSRNL 145
N D+I SS VSP++PT+F+ + RT F LR + + S
Sbjct: 252 NSDSIQSSSIPELVSPSYPTSFVHLVQPVLRTDLGAYDDFISLLRMSKNIVVGSRASSGS 311
Query: 144 WGPVD---GLGAYTPPSLSNIHALGAF 73
+G + GLGAYT S S+I LG +
Sbjct: 312 YGAIGLGLGLGAYT-GSTSSISTLGTY 337
>UniRef50_A6SQK8 Cluster: Putative uncharacterized protein; n=1;
Botryotinia fuckeliana B05.10|Rep: Putative
uncharacterized protein - Botryotinia fuckeliana B05.10
Length = 540
Score = 33.5 bits (73), Expect = 5.8
Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 6/97 (6%)
Frame = -1
Query: 375 TVDCESALNIID*SKQFISLLN*DNIHKSSRISRVSPNFPTTFMRRCFTI*RTSFPVKAY 196
T ALN D ++ ++ N D+I SS VSP++PT+F+ + RT
Sbjct: 137 TAPSTPALNQTDRKEE--NMHNSDSIQSSSIPEPVSPSYPTSFLHLIQPVLRTDLGAYDD 194
Query: 195 F---RRFLRKITRGKHSRNLWGPVD---GLGAYTPPS 103
F R R + + S +G + GLGAYT S
Sbjct: 195 FISLLRMSRNVVGSRVSSGSYGGIGLGLGLGAYTGSS 231
>UniRef50_Q6L1B5 Cluster: 30S ribosomal protein S4e; n=1;
Picrophilus torridus|Rep: 30S ribosomal protein S4e -
Picrophilus torridus
Length = 234
Score = 33.5 bits (73), Expect = 5.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 510 SIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 617
S+ + I +I+D +KF GN ITGG ++G + T
Sbjct: 153 SVLVKIPKKEIVDVLKFAPGNRVFITGGSHVGEIAT 188
>UniRef50_Q3W9H9 Cluster: Short-chain dehydrogenase/reductase SDR;
n=3; Actinomycetales|Rep: Short-chain
dehydrogenase/reductase SDR - Frankia sp. EAN1pec
Length = 390
Score = 33.1 bits (72), Expect = 7.6
Identities = 17/48 (35%), Positives = 20/48 (41%)
Frame = +1
Query: 610 WAHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGRTSRCR 753
+ HRV R R H Q G H H+ R+ R G G SR R
Sbjct: 18 YQHRVSRRADRRPGHWLLQRHQGGHPAHDTSARLRTRPGRPGERSRTR 65
>UniRef50_A6E8K7 Cluster: Putative uncharacterized protein; n=1;
Pedobacter sp. BAL39|Rep: Putative uncharacterized
protein - Pedobacter sp. BAL39
Length = 195
Score = 33.1 bits (72), Expect = 7.6
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = -1
Query: 213 FPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFK---CFLGPR 43
F KA FR+ +RK+ G+H+ +D A+T PSL H KR++ F+G R
Sbjct: 15 FFFKARFRKLIRKL--GRHTEVYLVDIDNTLAHTWPSLQQRHYSAENKRYRSLPIFIGMR 72
Query: 42 AML 34
+ L
Sbjct: 73 SYL 75
>UniRef50_Q18ED9 Cluster: Cell surface calcium-binding acidic-repeat
protein; n=1; Haloquadratum walsbyi DSM 16790|Rep: Cell
surface calcium-binding acidic-repeat protein -
Haloquadratum walsbyi (strain DSM 16790)
Length = 830
Score = 33.1 bits (72), Expect = 7.6
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 594 RNLGRVGTSCPARDIPAPS-TLCTSRTPRDTPSP 692
R+ G +G CPAR P P+ T + TP TP+P
Sbjct: 498 RDSGSLGKGCPARTTPTPTPTPTDTPTPTSTPTP 531
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 844,864,590
Number of Sequences: 1657284
Number of extensions: 18730705
Number of successful extensions: 54468
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 51619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54445
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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