BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1114 (756 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 155 8e-39 SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 155 8e-39 SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 153 2e-38 SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 30 0.31 SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.3 SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 27 2.2 SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.8 SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 26 5.0 SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 25 8.8 >SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 2|||Manual Length = 262 Score = 155 bits (375), Expect = 8e-39 Identities = 68/84 (80%), Positives = 75/84 (89%) Frame = +1 Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435 GKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G Sbjct: 74 GKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133 Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507 K VP+LVTHDGRTIRYPDPLIKVN Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVN 157 Score = 122 bits (293), Expect = 7e-29 Identities = 55/75 (73%), Positives = 61/75 (81%) Frame = +2 Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217 M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60 Query: 218 VL*IVKQRLIKVVGK 262 V I+ QRLIKV GK Sbjct: 61 VKAILMQRLIKVDGK 75 Score = 56.8 bits (131), Expect = 3e-09 Identities = 25/45 (55%), Positives = 33/45 (73%) Frame = +2 Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733 +G G IV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233 Score = 48.0 bits (109), Expect = 1e-06 Identities = 21/43 (48%), Positives = 30/43 (69%) Frame = +3 Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 617 P + +I+L++ T KI FIKF++ M+TGGRN+GRVGT Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194 >SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 2|||Manual Length = 262 Score = 155 bits (375), Expect = 8e-39 Identities = 68/84 (80%), Positives = 75/84 (89%) Frame = +1 Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435 GKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G Sbjct: 74 GKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133 Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507 K VP+LVTHDGRTIRYPDPLIKVN Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVN 157 Score = 120 bits (289), Expect = 2e-28 Identities = 54/75 (72%), Positives = 61/75 (81%) Frame = +2 Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217 M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60 Query: 218 VL*IVKQRLIKVVGK 262 V I+ QRLI+V GK Sbjct: 61 VKAILMQRLIQVDGK 75 Score = 57.6 bits (133), Expect = 2e-09 Identities = 25/45 (55%), Positives = 33/45 (73%) Frame = +2 Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733 +G G IV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGK 233 Score = 48.0 bits (109), Expect = 1e-06 Identities = 21/43 (48%), Positives = 30/43 (69%) Frame = +3 Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 617 P + +I+L++ T KI FIKF++ M+TGGRN+GRVGT Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194 >SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizosaccharomyces pombe|chr 1|||Manual Length = 262 Score = 153 bits (372), Expect = 2e-38 Identities = 67/84 (79%), Positives = 75/84 (89%) Frame = +1 Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435 GKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV G Sbjct: 74 GKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133 Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507 K VP+LVTHDGRTIRYPDPLIKVN Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVN 157 Score = 122 bits (293), Expect = 7e-29 Identities = 55/75 (73%), Positives = 61/75 (81%) Frame = +2 Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217 M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60 Query: 218 VL*IVKQRLIKVVGK 262 V I+ QRLIKV GK Sbjct: 61 VKAILMQRLIKVDGK 75 Score = 56.8 bits (131), Expect = 3e-09 Identities = 25/45 (55%), Positives = 33/45 (73%) Frame = +2 Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733 +G G IV RE H GSF+I+H+KD+ FATRL+NVF+IG+ K Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233 Score = 48.0 bits (109), Expect = 1e-06 Identities = 21/43 (48%), Positives = 30/43 (69%) Frame = +3 Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 617 P + +I+L++ T KI FIKF++ M+TGGRN+GRVGT Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194 >SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces pombe|chr 2|||Manual Length = 1014 Score = 30.3 bits (65), Expect = 0.31 Identities = 13/37 (35%), Positives = 20/37 (54%) Frame = -3 Query: 715 YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDVPTR 605 Y V+ P EG LD+H+ A ++L GH++ R Sbjct: 901 YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHEIGGR 937 >SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1953 Score = 28.3 bits (60), Expect = 1.3 Identities = 12/34 (35%), Positives = 15/34 (44%) Frame = +3 Query: 591 GRNLGRVGTSCPARDIPAPSTLCTSRTPRDTPSP 692 G N+G P IP T + P DTP+P Sbjct: 239 GDNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTP 272 >SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 |Schizosaccharomyces pombe|chr 1|||Manual Length = 932 Score = 27.5 bits (58), Expect = 2.2 Identities = 18/70 (25%), Positives = 28/70 (40%) Frame = +1 Query: 70 LKRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPLNCETTPHK 249 LK S+++ + + + R P V+ P P E FDR+ N + Sbjct: 336 LKSSETLKNPRNDDLLTLQQPPRYPHSQMVMLPARSPVEVPAPTFDRRNVSRNSNNNSPE 395 Query: 250 GCGKVRTDPT 279 G RT+PT Sbjct: 396 GYDNNRTNPT 405 >SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 3655 Score = 26.6 bits (56), Expect = 3.8 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +1 Query: 298 DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 474 +V S+EK N++F + Y+V + + + K+ ++ ++ KNVP + V H Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777 Query: 475 IR 480 ++ Sbjct: 1778 LK 1779 >SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1121 Score = 26.2 bits (55), Expect = 5.0 Identities = 9/27 (33%), Positives = 17/27 (62%) Frame = +3 Query: 477 PLSRPTYQSQRSIQLDIATTKIMDFIK 557 P S+PTY +R++ L+ K+ D ++ Sbjct: 1026 PRSKPTYMQKRTVLLNAEERKVRDLLQ 1052 >SPAC139.03 |||transcription factor, zf-fungal binuclear cluster type |Schizosaccharomyces pombe|chr 1|||Manual Length = 625 Score = 25.4 bits (53), Expect = 8.8 Identities = 12/48 (25%), Positives = 21/48 (43%) Frame = -2 Query: 638 DVSRGTRCAHAPQVTASRDHTQVPGLKLDEVHNLRSCNV*LDGTLTLI 495 D+ + PQ+ T++P DE+HN+ S + + T I Sbjct: 352 DLRTSETIGYPPQIVEGNYDTRLPSALPDEIHNVDSSVIISEATFVNI 399 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,383,544 Number of Sequences: 5004 Number of extensions: 73556 Number of successful extensions: 211 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 196 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 211 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 361294920 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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