Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1114
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...   155   8e-39
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...   155   8e-39
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...   153   2e-38
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    30   0.31 
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   1.3  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    27   2.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   3.8  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    26   5.0  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    25   8.8  

>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  155 bits (375), Expect = 8e-39
 Identities = 68/84 (80%), Positives = 75/84 (89%)
 Frame = +1

Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
           GKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G 
Sbjct: 74  GKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133

Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
           K VP+LVTHDGRTIRYPDPLIKVN
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVN 157



 Score =  122 bits (293), Expect = 7e-29
 Identities = 55/75 (73%), Positives = 61/75 (81%)
 Frame = +2

Query: 38  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 218 VL*IVKQRLIKVVGK 262
           V  I+ QRLIKV GK
Sbjct: 61  VKAILMQRLIKVDGK 75



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
           +G  G IV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +3

Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 617
           P  +   +I+L++ T KI  FIKF++    M+TGGRN+GRVGT
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score =  155 bits (375), Expect = 8e-39
 Identities = 68/84 (80%), Positives = 75/84 (89%)
 Frame = +1

Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
           GKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G 
Sbjct: 74  GKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133

Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
           K VP+LVTHDGRTIRYPDPLIKVN
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVN 157



 Score =  120 bits (289), Expect = 2e-28
 Identities = 54/75 (72%), Positives = 61/75 (81%)
 Frame = +2

Query: 38  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 218 VL*IVKQRLIKVVGK 262
           V  I+ QRLI+V GK
Sbjct: 61  VKAILMQRLIQVDGK 75



 Score = 57.6 bits (133), Expect = 2e-09
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
           +G  G IV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGK 233



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +3

Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 617
           P  +   +I+L++ T KI  FIKF++    M+TGGRN+GRVGT
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score =  153 bits (372), Expect = 2e-38
 Identities = 67/84 (79%), Positives = 75/84 (89%)
 Frame = +1

Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
           GKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAKYKLCKVKRV  G 
Sbjct: 74  GKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGA 133

Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
           K VP+LVTHDGRTIRYPDPLIKVN
Sbjct: 134 KGVPFLVTHDGRTIRYPDPLIKVN 157



 Score =  122 bits (293), Expect = 7e-29
 Identities = 55/75 (73%), Positives = 61/75 (81%)
 Frame = +2

Query: 38  MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
           M RGPKKHLKR+ AP  W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1   MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60

Query: 218 VL*IVKQRLIKVVGK 262
           V  I+ QRLIKV GK
Sbjct: 61  VKAILMQRLIKVDGK 75



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 25/45 (55%), Positives = 33/45 (73%)
 Frame = +2

Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
           +G  G IV RE H GSF+I+H+KD+    FATRL+NVF+IG+  K
Sbjct: 189 MGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGK 233



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/43 (48%), Positives = 30/43 (69%)
 Frame = +3

Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGT 617
           P  +   +I+L++ T KI  FIKF++    M+TGGRN+GRVGT
Sbjct: 152 PLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGT 194


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1014

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 715  YEHVVQPRGEGVSRGVLDVHNVEGAGMSLAGHDVPTR 605
            Y  V+ P  EG     LD+H+   A ++L GH++  R
Sbjct: 901  YRVVLHPEHEGAVVEFLDIHDAGKASLALEGHEIGGR 937


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 591 GRNLGRVGTSCPARDIPAPSTLCTSRTPRDTPSP 692
           G N+G      P   IP   T   +  P DTP+P
Sbjct: 239 GDNVGSNSKGSPTTSIPEHKTSINNNKPEDTPTP 272


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 18/70 (25%), Positives = 28/70 (40%)
 Frame = +1

Query: 70  LKRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPLNCETTPHK 249
           LK S+++   +    +  +   R P    V+ P   P E     FDR+    N      +
Sbjct: 336 LKSSETLKNPRNDDLLTLQQPPRYPHSQMVMLPARSPVEVPAPTFDRRNVSRNSNNNSPE 395

Query: 250 GCGKVRTDPT 279
           G    RT+PT
Sbjct: 396 GYDNNRTNPT 405


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 298  DVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYL-VTHDGRT 474
            +V S+EK N++F + Y+V  +     +   +   K+  ++ ++   KNVP + V H    
Sbjct: 1718 NVSSLEKCNQIFSIFYEVFFQHPSTNVYANDEGIKIGALQIISFFLKNVPEITVQHQTEM 1777

Query: 475  IR 480
            ++
Sbjct: 1778 LK 1779


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 477  PLSRPTYQSQRSIQLDIATTKIMDFIK 557
            P S+PTY  +R++ L+    K+ D ++
Sbjct: 1026 PRSKPTYMQKRTVLLNAEERKVRDLLQ 1052


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = -2

Query: 638 DVSRGTRCAHAPQVTASRDHTQVPGLKLDEVHNLRSCNV*LDGTLTLI 495
           D+       + PQ+      T++P    DE+HN+ S  +  + T   I
Sbjct: 352 DLRTSETIGYPPQIVEGNYDTRLPSALPDEIHNVDSSVIISEATFVNI 399


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,383,544
Number of Sequences: 5004
Number of extensions: 73556
Number of successful extensions: 211
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)