Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1114
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 132 2e-31
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 129 2e-30
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 128 4e-30
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.99
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 31 1.3
12_02_0735 - 22636835-22639502,22639755-22640734 29 3.0
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 3.0
06_01_0083 - 659510-661267,661577-662384,662700-663646 29 4.0
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 4.0
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 5.3
02_01_0285 - 1913425-1914065,1914094-1914177,1914249-1915140,191... 28 7.0
04_01_0252 - 3329712-3331061 28 9.2
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 132 bits (320), Expect = 2e-31
Identities = 60/84 (71%), Positives = 68/84 (80%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I E+AK+KLCKV+ V G
Sbjct: 90 GKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSIKDEDAKFKLCKVRSVQFGQ 149
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K +P+L T+DGRTIRYPDPLIK N
Sbjct: 150 KGIPFLNTNDGRTIRYPDPLIKAN 173
Score = 116 bits (280), Expect = 2e-26
Identities = 53/74 (71%), Positives = 61/74 (82%)
Frame = +2
Query: 41 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 220
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 221 L*IVKQRLIKVVGK 262
+ I+ QR + V GK
Sbjct: 78 ISILMQRHVMVDGK 91
Score = 58.4 bits (135), Expect = 6e-09
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 602 GARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
G G I SRE+H GSF+ +H++D+ GH FATR+ NVF IGK K
Sbjct: 206 GRVGVIKSREKHKGSFETIHVEDALGHQFATRMGNVFTIGKERK 249
Score = 56.8 bits (131), Expect = 2e-08
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P ++ +I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 168 PLIKANDTIKIDLETNKIVDFIKFDVGNIVMVTGGRNTGRVG 209
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 129 bits (312), Expect = 2e-30
Identities = 57/84 (67%), Positives = 67/84 (79%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G
Sbjct: 74 GKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQ 133
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K +PYL T+DGRTIRYPDPLIK N
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKAN 157
Score = 119 bits (286), Expect = 3e-27
Identities = 54/75 (72%), Positives = 63/75 (84%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 218 VL*IVKQRLIKVVGK 262
V+ I+ QR + V GK
Sbjct: 61 VISILMQRHVLVDGK 75
Score = 62.1 bits (144), Expect = 5e-10
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +2
Query: 602 GARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
G G I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALGHAFATRLGNVFTIGKGNK 233
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P ++ +I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 152 PLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 128 bits (310), Expect = 4e-30
Identities = 56/84 (66%), Positives = 67/84 (79%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + + E+AK+KLCKV+ V G
Sbjct: 74 GKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVKDEDAKFKLCKVRSVQFGQ 133
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K +PYL T+DGRTIRYPDP+IK N
Sbjct: 134 KGIPYLNTYDGRTIRYPDPIIKAN 157
Score = 119 bits (286), Expect = 3e-27
Identities = 54/75 (72%), Positives = 63/75 (84%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 218 VL*IVKQRLIKVVGK 262
V+ I+ QR + V GK
Sbjct: 61 VISILMQRHVLVDGK 75
Score = 61.7 bits (143), Expect = 6e-10
Identities = 26/44 (59%), Positives = 33/44 (75%)
Frame = +2
Query: 602 GARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
G G I +RE+H GSF+ +H++D+ GH FATRL NVF IGKG K
Sbjct: 190 GRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNK 233
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P ++ +I++D+ T KI+DFIKF+ GN+ M+TGGRN GRVG
Sbjct: 152 PIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVG 193
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.99
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -2
Query: 182 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 81
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +1
Query: 79 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPLNCETTP 243
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + ++CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 726 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 631
PL NT+ +++A PVE L C +S + G L
Sbjct: 425 PLVTANTILSILAADYPVEKLACYLSDDGGAL 456
>01_05_0279 +
20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.5 bits (63), Expect = 3.0
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 746 RDVRPSCPCRL*TRCSTSWRRCVPWSP*CAQCRRSRDVSRGTRCAHAPQV 597
R +RP+ P L T ++SWR C W+ A RR+ D+ R +P V
Sbjct: 34 RFMRPNLPVVL-TGLTSSWRSCHDWTLAAAADRRAPDLDFLARSFPSPLV 82
>06_01_0083 - 659510-661267,661577-662384,662700-663646
Length = 1170
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 726 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 631
PL NT+ +++A PVE L C +S + G L
Sbjct: 414 PLVTANTILSILAADYPVEKLSCYVSDDGGAL 445
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -1
Query: 195 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 67
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 154 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 41
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>02_01_0285 -
1913425-1914065,1914094-1914177,1914249-1915140,
1915205-1915249,1915335-1915870,1915987-1916041
Length = 750
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 331 FRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
+ LIYD++G + + P++A L ++ V T P
Sbjct: 147 YALIYDIQGSLALPILDPDDASSPLAVLELVTTAP 181
>04_01_0252 - 3329712-3331061
Length = 449
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = -2
Query: 146 CGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSIKSRKKR 6
C D+ V TH+ V P S W+R AS G W S +R
Sbjct: 112 CTDQERVGFATHQLVGPASEWWDRYEASRPE-GHTITWNEFSSVFRR 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,780,444
Number of Sequences: 37544
Number of extensions: 553473
Number of successful extensions: 1804
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1804
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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