Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1114
(756 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.) 142 2e-34
SB_19792| Best HMM Match : SspH (HMM E-Value=6.6) 29 4.1
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4
SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5) 28 7.1
SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 28 9.4
SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9) 28 9.4
SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22) 28 9.4
SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1) 28 9.4
>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 142 bits (345), Expect = 2e-34
Identities = 65/84 (77%), Positives = 72/84 (85%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+RV G
Sbjct: 498 GKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRRVDVGA 557
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K VPY+VTHD RTIRYPDP IKVN
Sbjct: 558 KGVPYIVTHDARTIRYPDPNIKVN 581
Score = 140 bits (338), Expect = 1e-33
Identities = 64/75 (85%), Positives = 68/75 (90%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARGPKKH+KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G E
Sbjct: 425 MARGPKKHMKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEE 484
Query: 218 VL*IVKQRLIKVVGK 262
V IVKQRLIK+ GK
Sbjct: 485 VKKIVKQRLIKIDGK 499
Score = 71.7 bits (168), Expect = 6e-13
Identities = 29/45 (64%), Positives = 36/45 (80%)
Frame = +2
Query: 599 LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
+G G + RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K
Sbjct: 613 MGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNK 657
Score = 53.6 bits (123), Expect = 2e-07
Identities = 20/42 (47%), Positives = 32/42 (76%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P + ++ +DI T K++D+IKF++GN+ M+ GGRN+GRVG
Sbjct: 576 PNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRNMGRVG 617
>SB_19792| Best HMM Match : SspH (HMM E-Value=6.6)
Length = 244
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = -2
Query: 236 VSQFKGLRFRSKHTSDDSSGKSPGASTRATCGDRLTVSVHTH 111
V+ K R ++H SD + ++ TCG RLT S H H
Sbjct: 148 VNDSKTARIYTQHVSDSQTARTFTQRASTTCG-RLTDSAHLH 188
>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1776
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +1
Query: 232 ETTPHKGCGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 360
E+T +G G + P+YP+ ++ ++ +N+LF + R
Sbjct: 609 ESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651
>SB_46368| Best HMM Match : DUF156 (HMM E-Value=6.5)
Length = 203
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -1
Query: 180 RKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAF-KRFKCFLGPRAMLDK 28
RK +R N++G ++GLG+ PP + I F K K F PR K
Sbjct: 60 RKRSRSLPRTNVFGTLNGLGSPPPPRDNRIDEYAEFTKSQKSFTFPRRSKQK 111
>SB_29195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 27.9 bits (59), Expect = 9.4
Identities = 40/144 (27%), Positives = 58/144 (40%)
Frame = +1
Query: 316 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 495
+T ++ Y K R I+R E+AK K + KR N+P V + R +++
Sbjct: 282 QTRAKYQKDYYSKNREKINRKIREKAKLKR-EEKRA-----NLPDEVAN--RRLKWRQKF 333
Query: 496 IKVNVPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWGAWAHRVPRETSRLLRHCAHQGLH 675
I VNV S+ L R SS +SP SR + + G+ R R TS R + L
Sbjct: 334 IVVNVESALPLITRPSHCSSRVSPAPSNTSRRSSSRGS-VPRPRRSTSHDRRSSSRDRLE 392
Query: 676 GTHLRHEVEQRVHNRQGHEGRTSR 747
R R+ R R
Sbjct: 393 MRDRRSASRDRLQMRNRRSASRDR 416
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 241 PHKGCGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKY 399
P K K++TDP YP V IE + F + D R + + PE Y
Sbjct: 2057 PGKELSKLKTDPYYPNDPSLVEIIENFDAPFDVDSDYGSRVKGYFVAPETGNY 2109
>SB_190| Best HMM Match : Carotene_hydrox (HMM E-Value=2.9)
Length = 356
Score = 27.9 bits (59), Expect = 9.4
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +1
Query: 172 DFPEESSEVCFDRKRSPLNCETTPHKGCGKVRTDPTYPAGFMDVVSIEKTNELF---RLI 342
DFP E D + P + P G KV T P YP V+S E + F R
Sbjct: 11 DFPCEEIAEIIDASKIPYPVKA-PAPGTCKVLTSPPYPKLLGQVLSRELKHRAFYRQRRR 69
Query: 343 YDVKGRFTIHRITPEEAKYKLCKVKRVATGPKN 441
+G + + P + K + ++ATG ++
Sbjct: 70 QGREGLWASSPVAPAKIKTLSRRKTQLATGTED 102
>SB_56951| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 815
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 607 AWAHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRV-HNRQG 726
AWA P E RL H+ H++H + +++ H + G
Sbjct: 21 AWAPYRPLEVERLFAFSEHRASIAEHIKHAIAKQIKHAKSG 61
>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
Length = 595
Score = 27.9 bits (59), Expect = 9.4
Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = +3
Query: 471 HHPLSRPTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRN-LGRVGTSCPARDIPAP 647
H P + P++ R + D T + + ++ G I R LGRV + P R +P
Sbjct: 339 HLPPTSPSFTPGR-VHSDPETPRRAERVRARRGPGSAIARLRAPLGRVARTPPRRAAASP 397
Query: 648 STLCTSRTPRDTPSPR 695
+RTP TPS R
Sbjct: 398 LVGYAARTPPRTPSIR 413
>SB_36010| Best HMM Match : Remorin_C (HMM E-Value=6.1)
Length = 183
Score = 27.9 bits (59), Expect = 9.4
Identities = 40/144 (27%), Positives = 58/144 (40%)
Frame = +1
Query: 316 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 495
+T ++ Y K R I+R E+AK K + KR N+P V + R +++
Sbjct: 22 QTRAKYQKDYYSKNREKINRKIREKAKLKR-EEKRA-----NLPDEVAN--RRLKWRQKF 73
Query: 496 IKVNVPSS*TLQLRRLWTSSSLSPGTCV*SREAVTWGAWAHRVPRETSRLLRHCAHQGLH 675
I VNV S+ L R SS +SP SR + + G+ R R TS R + L
Sbjct: 74 IVVNVESALPLITRPSHCSSRVSPAPSNTSRRSSSRGS-VPRPRRSTSHDRRSSSRDRLE 132
Query: 676 GTHLRHEVEQRVHNRQGHEGRTSR 747
R R+ R R
Sbjct: 133 MRDRRSASRDRLQMRNRRSASRDR 156
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,997,356
Number of Sequences: 59808
Number of extensions: 616292
Number of successful extensions: 1956
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1950
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -