Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1114
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   123   1e-28
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    30   2.0  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  123 bits (297), Expect = 1e-28
 Identities = 58/105 (55%), Positives = 71/105 (67%)
 Frame = +1

Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
           GKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK V T  
Sbjct: 73  GKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVN 132

Query: 436 KNVPYLVTHDGRTIRYPDPLIKVNVPSS*TLQLRRLWTSSSLSPG 570
           K VP L T DGRTIRYPDP +KVN      +  +++  S    PG
Sbjct: 133 KGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPG 177



 Score =  109 bits (261), Expect = 3e-24
 Identities = 51/73 (69%), Positives = 58/73 (79%)
 Frame = +2

Query: 44  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 223
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 224 *IVKQRLIKVVGK 262
            I+ QR+++V GK
Sbjct: 62  KILTQRVVRVDGK 74



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 32/56 (57%), Positives = 40/56 (71%)
 Frame = +2

Query: 572 LVYDHGRP*LGARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKGV 739
           L Y  G   +G  G I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG K +
Sbjct: 179 LAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKAL 234



 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/56 (42%), Positives = 33/56 (58%)
 Frame = +3

Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTSCPARDIPAPSTL 656
           P  +   +I  +I+T KI D +KFE GNL  +TGGRN+GRVG       +P  S +
Sbjct: 151 PHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDI 206


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 355 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 486
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = +1

Query: 613 AHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGRTSR 747
           AH  P        H  H   HG H  H  ++  H+  GH  + S+
Sbjct: 679 AHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKHSK 723


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,243,889
Number of Sequences: 27780
Number of extensions: 440785
Number of successful extensions: 1191
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1184
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)