Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1114
         (756 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    28   0.082
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    25   0.77 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   1.8  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    24   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.1  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   5.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   7.1  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   9.4  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   9.4  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   9.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 28.3 bits (60), Expect = 0.082
 Identities = 13/39 (33%), Positives = 25/39 (64%)
 Frame = -1

Query: 393 SLLRGDTVDCESALNIID*SKQFISLLN*DNIHKSSRIS 277
           SLL+ +TV C+ A++++  +   + +++ DNIH    IS
Sbjct: 381 SLLKENTVTCQEAMHMLKNADSQLLVISDDNIHIKGVIS 419


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 25.0 bits (52), Expect = 0.77
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 630 RDIPAPSTLCTSRTPRDTPSP 692
           RD+P  ST  T+   RDT +P
Sbjct: 137 RDLPGKSTTTTAEVKRDTINP 157


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 664 DVHNVEGAGMSLAGHDV 614
           DVH V GAG  +  HDV
Sbjct: 110 DVHGVIGAGHWIGDHDV 126


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = -1

Query: 504 DFDKWVWIADGAAIMRYQVRNILRSGRHTLDFTQLVLSLLRGDTVDCESALNIID*SKQF 325
           D    +WI  G  +M +    + R G+  +  T L+ ++L    + CE  +NI   +K +
Sbjct: 57  DVHVMIWIGFGF-LMTF----LRRYGQSAVGLTFLLGAILVQVAIICEGVMNIQKDNKSY 111

Query: 324 ISL 316
           +SL
Sbjct: 112 LSL 114


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 630 RDIPAPSTLCTSRTPRDTPSP 692
           RD+P  ST  T    RDT +P
Sbjct: 137 RDLPGKSTTTTVEVKRDTINP 157


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +3

Query: 477 PLSRPTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTSCPARDI 638
           PLS PTY     ++L       +  + F+ G L       N   + T   +RD+
Sbjct: 256 PLSHPTYDWFEKLELKWFAVPAVSGMVFDCGGLEFTAAPFNGWYMSTEIGSRDL 309


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 477 PLSRPTYQSQRSIQLDIATTKIMDFI 554
           P+S P   S R  +L +AT  I+ F+
Sbjct: 170 PVSYPQIMSPRRARLLVATVWILSFV 195


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = -3

Query: 631 LAGHDVPTRPKLRPPVIIHKFPDSNLMKSIIFVVAMSNWM 512
           L   D P +P   PP      PDS  +  I  +    N M
Sbjct: 332 LGDSDTPPKPAPPPPPPSSSGPDSAKLDKIFDIATKENAM 371


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 198 YFRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLS 97
           Y R  +R  T  +H ++    +DG+G Y   S S
Sbjct: 83  YNRMDMRNATYYQHQQDHGSGMDGMGGYRSASPS 116


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 458 RMMAAPSAIQTHLSKSTFHPVRHCNYED 541
           R++  PSA +T LSK  +  + H    D
Sbjct: 233 RLLDEPSANRTDLSKDDYESLVHLYTRD 260



 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 76  RSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPE 183
           +S++ DV ++WR +  E  NR+    R++    + E
Sbjct: 261 QSETYDVLRSWRNLMDEHSNRTNSDPRMILTEAYTE 296


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 224 KGLRFRSKHTSDDSSGKSPGASTRAT 147
           K L  RSK  S +S G+S  ++T  T
Sbjct: 71  KKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 224 KGLRFRSKHTSDDSSGKSPGASTRAT 147
           K L  RSK  S +S G+S  ++T  T
Sbjct: 71  KKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 224 KGLRFRSKHTSDDSSGKSPGASTRAT 147
           K L  RSK  S +S G+S  ++T  T
Sbjct: 71  KKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 224 KGLRFRSKHTSDDSSGKSPGASTRAT 147
           K L  RSK  S +S G+S  ++T  T
Sbjct: 71  KKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 224 KGLRFRSKHTSDDSSGKSPGASTRAT 147
           K L  RSK  S +S G+S  ++T  T
Sbjct: 71  KKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 224 KGLRFRSKHTSDDSSGKSPGASTRAT 147
           K L  RSK  S +S G+S  ++T  T
Sbjct: 71  KKLSKRSKSRSPESRGRSNASNTSKT 96


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 224 KGLRFRSKHTSDDSSGKSPGASTRAT 147
           K L  RSK  S +S G+S  ++T  T
Sbjct: 71  KKLSKRSKSRSPESRGRSNASNTSKT 96


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 224 KGLRFRSKHTSDDSSGKSPGASTRAT 147
           K L  RSK  S +S G+S  ++T  T
Sbjct: 71  KKLSKRSKSRSPESRGRSNASNTSKT 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,539
Number of Sequences: 438
Number of extensions: 5177
Number of successful extensions: 23
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)