Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1114
(756 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) riboso... 137 8e-33
At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B) 137 8e-33
At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contai... 137 8e-33
At4g10710.1 68417.m01751 transcriptional regulator-related simil... 31 0.83
At5g16910.1 68418.m01982 cellulose synthase family protein simil... 29 2.5
At5g07660.1 68418.m00877 structural maintenance of chromosomes (... 29 2.5
At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11, ... 29 2.5
At3g03050.1 68416.m00301 cellulose synthase family protein (CslD... 29 3.3
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 3.3
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 29 4.4
At5g61460.1 68418.m07712 structural maintenance of chromosomes (... 28 5.8
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 28 7.7
>At5g58420.1 68418.m07315 40S ribosomal protein S4 (RPS4D) ribosomal
protein S4, Arabidopsis thaliana, PIR:T48480
Length = 262
Score = 137 bits (331), Expect = 8e-33
Identities = 62/84 (73%), Positives = 69/84 (82%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G
Sbjct: 74 GKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQ 133
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K +PYL T+DGRTIRYPDPLIK N
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKPN 157
Score = 121 bits (291), Expect = 6e-28
Identities = 56/75 (74%), Positives = 64/75 (85%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 218 VL*IVKQRLIKVVGK 262
V+ I+ QR I+V GK
Sbjct: 61 VISILMQRHIQVDGK 75
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +2
Query: 602 GARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
G G I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P + +I+LD+ KI++FIKF+ GN+ M+TGGRN GRVG
Sbjct: 152 PLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNRGRVG 193
>At5g07090.1 68418.m00804 40S ribosomal protein S4 (RPS4B)
Length = 262
Score = 137 bits (331), Expect = 8e-33
Identities = 62/84 (73%), Positives = 69/84 (82%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G
Sbjct: 74 GKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQ 133
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K +PYL T+DGRTIRYPDPLIK N
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKPN 157
Score = 121 bits (291), Expect = 6e-28
Identities = 56/75 (74%), Positives = 64/75 (85%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 218 VL*IVKQRLIKVVGK 262
V+ I+ QR I+V GK
Sbjct: 61 VISILMQRHIQVDGK 75
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +2
Query: 602 GARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
G G I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P + +I+LD+ KI++FIKF+ GN+ M+TGGRN GRVG
Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVG 193
>At2g17360.1 68415.m02005 40S ribosomal protein S4 (RPS4A) contains
ribosomal protein S4 signature from residues 8 to 22
Length = 261
Score = 137 bits (331), Expect = 8e-33
Identities = 62/84 (73%), Positives = 69/84 (82%)
Frame = +1
Query: 256 GKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGP 435
GKVRTD TYPAGFMDVVSI KTNE FRL+YD KGRF +H I EEAK+KLCKV+ + G
Sbjct: 74 GKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAKFKLCKVRSIQFGQ 133
Query: 436 KNVPYLVTHDGRTIRYPDPLIKVN 507
K +PYL T+DGRTIRYPDPLIK N
Sbjct: 134 KGIPYLNTYDGRTIRYPDPLIKPN 157
Score = 121 bits (291), Expect = 6e-28
Identities = 56/75 (74%), Positives = 64/75 (85%)
Frame = +2
Query: 38 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 217
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPLV+ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYRE 60
Query: 218 VL*IVKQRLIKVVGK 262
V+ I+ QR I+V GK
Sbjct: 61 VISILMQRHIQVDGK 75
Score = 66.5 bits (155), Expect = 2e-11
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +2
Query: 602 GARGHIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTK 733
G G I +RE+H GSF+ +HI+DSTGH FATRL NV+ IGKGTK
Sbjct: 190 GRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTK 233
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/42 (52%), Positives = 31/42 (73%)
Frame = +3
Query: 489 PTYQSQRSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVG 614
P + +I+LD+ KI++FIKF+ GN+ M+TGGRN GRVG
Sbjct: 152 PLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNRGRVG 193
>At4g10710.1 68417.m01751 transcriptional regulator-related similar
to chromatin-specific transcription elongation factor
FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
Length = 1074
Score = 31.1 bits (67), Expect = 0.83
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 162 KHSRNLWGPVDGLGAYTPPSLSNIHAL 82
KHS +LWG D L TPP+ ++ L
Sbjct: 44 KHSADLWGSADALAIATPPASDDLRYL 70
>At5g16910.1 68418.m01982 cellulose synthase family protein similar
to gi:2827143 cellulose synthase catalytic subunit,
Arabidopsis thaliana, gi:9622886 cellulose synthase-7
from Zea mays
Length = 1145
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 726 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 631
PL NT+ +++A PVE L C +S + G L
Sbjct: 395 PLVTANTILSILAAEYPVEKLSCYVSDDGGAL 426
>At5g07660.1 68418.m00877 structural maintenance of chromosomes
(SMC) family protein similar to SMC-like protein (MIM)
[Arabidopsis thaliana] GI:5880614; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain
Length = 1058
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +2
Query: 572 LVYDHGRP*LGARGHIVSRERHPGSFDIVHIKDST 676
++YD RP L H++ + HP ++H +++T
Sbjct: 533 IIYDFSRPRLDIPRHMIPQTEHPTILSVLHSENTT 567
>At1g31817.1 68414.m03907 chloroplast 30S ribosomal protein S11,
putative contains Pfam profile: PF00411: Ribosomal
protein S11
Length = 314
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 563 VRELVYDHGRP*LGARGHIVSRERHPGSFDIVHIKDSTGHTFAT 694
VRE++ D GR G H R + DI+HIK +TF T
Sbjct: 166 VREVIEDEGRRTAGIFSHF-QRPNLETNADIIHIKMLRNNTFVT 208
>At3g03050.1 68416.m00301 cellulose synthase family protein (CslD3)
similar to cellulose synthase catalytic subunit
gi:2827143 from [Arabidopsis thaliana], cellulose
synthase-7 (gi:9622886) from Zea mays; contains Pfam
profile PF03552: Cellulose synthase
Length = 1145
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 726 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 631
PL NT+ +++A PVE L C +S + G L
Sbjct: 392 PLVTSNTILSILAADYPVEKLACYVSDDGGAL 423
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 726 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 631
PL NT+ +++A PVE L C +S + G L
Sbjct: 416 PLVTANTILSILAVDYPVEKLACYLSDDGGAL 447
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 632 RHPGSFDIVHIKDSTGHTFA-TRLNNVFIIGKGTKG 736
R P +V + HT A T NNVF G+GT G
Sbjct: 323 RFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNG 358
>At5g61460.1 68418.m07712 structural maintenance of chromosomes
(SMC) family protein very strong similarity to SMC-like
protein (MIM) [Arabidopsis thaliana] GI:5880614;
contains Pfam profile PF02463: RecF/RecN/SMC N terminal
domain
Length = 1057
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 572 LVYDHGRP*LGARGHIVSRERHPGSFDIVHIKDST 676
++YD RP L H+V + HP F ++ + T
Sbjct: 532 IIYDFSRPRLNIPRHMVPQTEHPTIFSVIDSDNPT 566
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 726 PLPIMNTLFNLVAKVCPVESLMCTMSKEPGCL 631
PL NT+ +++A PVE + C +S + G L
Sbjct: 370 PLVTANTILSILAVDYPVEKVSCYLSDDGGAL 401
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,301,400
Number of Sequences: 28952
Number of extensions: 411720
Number of successful extensions: 1162
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1162
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -