Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1113
         (701 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IE77 Cluster: Putative uncharacterized protein Phat82...    35   2.2  
UniRef50_UPI0000DBF0D9 Cluster: UPI0000DBF0D9 related cluster; n...    33   5.1  
UniRef50_Q5WU81 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  

>UniRef50_Q8IE77 Cluster: Putative uncharacterized protein Phat82;
           n=2; Plasmodium|Rep: Putative uncharacterized protein
           Phat82 - Plasmodium falciparum (isolate 3D7)
          Length = 1459

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +3

Query: 180 IPYFKINNVFVALISFIVLCQYIIIRAVISYFH 278
           IPY K+NNVF+ L  FI+L  +II + +  +FH
Sbjct: 503 IPYTKLNNVFINL--FIILLNHIIRQKIKRFFH 533


>UniRef50_UPI0000DBF0D9 Cluster: UPI0000DBF0D9 related cluster; n=2;
           Rattus norvegicus|Rep: UPI0000DBF0D9 UniRef100 entry -
           Rattus norvegicus
          Length = 393

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 151 FVILHDAIRLRGCPINSICIFRCSCLYVYFC 59
           ++ +H    +R C +   C+F C C+Y Y C
Sbjct: 114 YLCVHTYAGVRACILTRTCMFTCLCVYAYLC 144


>UniRef50_Q5WU81 Cluster: Putative uncharacterized protein; n=1;
           Legionella pneumophila str. Lens|Rep: Putative
           uncharacterized protein - Legionella pneumophila (strain
           Lens)
          Length = 222

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
 Frame = +3

Query: 120 LSLIASCKITN*IQIFSLSLIP-YFKIN--NVF-VALISFIVLCQYIIIRAVISYFHFIV 287
           L  I S  + N +    +SL P YFK +   +F +  I  +++   +++ AVI++FH+ +
Sbjct: 45  LDFIYSLGLINILAFVCISLFPSYFKYDPFKIFNIIPIMLLLIVNTVLVAAVIAFFHWGL 104

Query: 288 CKQFTF 305
           CK   F
Sbjct: 105 CKGLGF 110


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 557,291,849
Number of Sequences: 1657284
Number of extensions: 10296600
Number of successful extensions: 20203
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20030
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)