Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1113
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S...    27   2.6  
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...    26   6.0  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    26   6.0  
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...    26   6.0  

>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
           Vma6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 57  EQKYTYKHEHLKIHILFIGQPLSLIASCKITN*IQIFSLSLIPYFKINNVFVALISFIVL 236
           E+   +  EH+ ++  F  +P++ + SC   +     S S +  ++I + F  L SF   
Sbjct: 48  EEAADFVMEHVDVYPNFTKKPITKVVSCATQDIFYALSDSQVYVYQI-STFKKLFSFGAH 106

Query: 237 CQ 242
           CQ
Sbjct: 107 CQ 108


>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 33  QYLNYIPIEQKYTYKHEHLKIHI 101
           +YL++IP   +Y  +H++L  H+
Sbjct: 86  EYLHFIPKYNRYEKRHKNLAAHV 108


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 186 YFKINNVFVALISFIVLCQYIIIRAVISY 272
           +F INN+F  L  F V   Y++   V +Y
Sbjct: 195 HFMINNLFEGLFWFFVPVCYVVCNDVFAY 223


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +3

Query: 33  QYLNYIPIEQKYTYKHEHLKIHI 101
           +YL++IP   +Y  +H++L  H+
Sbjct: 86  EYLHFIPKYNRYEKRHKNLAAHV 108


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,488,489
Number of Sequences: 5004
Number of extensions: 49221
Number of successful extensions: 96
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)