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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1113
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0396 - 28600855-28601475,28601579-28601761,28601970-286021...    30   2.0  
06_02_0037 - 10856616-10856915,10857527-10860238                       28   8.3  

>02_05_0396 -
           28600855-28601475,28601579-28601761,28601970-28602129,
           28602217-28602795,28603044-28603618,28604161-28604176,
           28605566-28605663,28605774-28606286
          Length = 914

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 162 IFSLSLIPYFKINNVFVALISFIVLCQYIIIRAVISYFHFIVCKQFTFPPFS 317
           +FS  + P+F   N+FV  + F+    Y+++   I+Y+ F +    TFP FS
Sbjct: 485 LFSPLISPFFATANIFVGFVLFL----YVLV--PIAYWGFDLYNAKTFPIFS 530


>06_02_0037 - 10856616-10856915,10857527-10860238
          Length = 1003

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 384 NILLTVLKACVVYHWLIHPNCK 319
           ++L  V+  CVV HWL+ P+ K
Sbjct: 191 SLLSVVVFGCVVVHWLVAPSSK 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,698,858
Number of Sequences: 37544
Number of extensions: 238821
Number of successful extensions: 343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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