Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1113
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)            29   3.6  
SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3)               29   3.6  
SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)              28   6.4  
SB_27573| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_41907| Best HMM Match : Reprolysin (HMM E-Value=9.2e-05)
          Length = 656

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +3

Query: 120 LSLIASCKITN*IQIFSLSLIPYFKINNVFVALISFIVLCQYIIIRAVISYFHFIVCKQF 299
           LS+I +  I + I I  + +I   K NN+ + +I  I++  +I+I + +S     +    
Sbjct: 394 LSIIIAI-IIDVITILFIVIIIIIKDNNININIIIDIIINTFILINSSVSSSKTAISSST 452

Query: 300 TFPPFS 317
           T PP S
Sbjct: 453 TSPPLS 458


>SB_25711| Best HMM Match : Oxidored_q1_N (HMM E-Value=3)
          Length = 166

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/66 (28%), Positives = 34/66 (51%)
 Frame = +3

Query: 120 LSLIASCKITN*IQIFSLSLIPYFKINNVFVALISFIVLCQYIIIRAVISYFHFIVCKQF 299
           LS+I +  I + I I  + +I   K NN+ + +I  I++  +I+I + +S     +    
Sbjct: 80  LSIIIAI-IIDVITILFIVIIIIIKDNNININIIIDIIINTFILINSSVSSSKTAISSST 138

Query: 300 TFPPFS 317
           T PP S
Sbjct: 139 TSPPLS 144


>SB_36857| Best HMM Match : zf-C3HC4 (HMM E-Value=2.8e-05)
          Length = 576

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 274 FILLYANNLRSRLFHFAIRVNQPVVHHTC 360
           +IL+Y  N +S+ F F  R  Q ++   C
Sbjct: 439 YILVYCKNFKSKRFRFGFRFGQGILSSDC 467


>SB_27573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 42  NYIPIEQKYTYKHEHLKIHI 101
           N +P+ +KYTY H   K+H+
Sbjct: 151 NGMPVTRKYTYTHPDTKMHV 170


>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/30 (33%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -1

Query: 614 IKLNYYCFVY-Y*HINIKLHCFIYYYVYSF 528
           I++ +Y ++Y Y +I I ++ +IY Y Y++
Sbjct: 5   IQVTFYIYIYIYIYIYIYIYIYIYTYTYTY 34


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,182,642
Number of Sequences: 59808
Number of extensions: 337241
Number of successful extensions: 713
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)