Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1113
         (701 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    31   4.0  
AK095631-1|BAC04594.1|  134|Homo sapiens protein ( Homo sapiens ...    30   9.2  

>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
 Frame = +3

Query: 66  YTYKHEHLKIHILFIGQPLSLIASCKITN*IQIFSLSLIPY-FKINNVFVAL-ISFIVLC 239
           Y Y H H+ +HI         I +C I   I +++L +  Y +    + + +  S I +C
Sbjct: 102 YIYTHIHICVHINMYVSIYVYIYTC-IQIYIYMYTLYVCTYTYMCTYIHICIHTSIIYVC 160

Query: 240 QYIIIRAVISYFHFIVC 290
            YI I+  ++ + ++VC
Sbjct: 161 VYIHIQCPLNIYIYLVC 177


>AK095631-1|BAC04594.1|  134|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38312 fis, clone FCBBF3021506. ).
          Length = 134

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 115 CPINSICIFRCSCLYVYFC 59
           C    +C+F C C+YVY C
Sbjct: 65  CVCLYVCVFVCVCMYVYLC 83


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,248,298
Number of Sequences: 237096
Number of extensions: 1538970
Number of successful extensions: 2030
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2028
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)