Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1112
         (310 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0NEK0 Cluster: ENSANGP00000029839; n=1; Anopheles gamb...    36   0.23 
UniRef50_Q16H62 Cluster: Target of poxn; n=2; Aedes aegypti|Rep:...    33   0.94 
UniRef50_UPI0000D56026 Cluster: PREDICTED: similar to CG7659-PA;...    31   5.0  
UniRef50_O16867 Cluster: Basic helix-loop-helix neural transcrip...    31   5.0  
UniRef50_A0V8H4 Cluster: Phage integrase; n=1; Delftia acidovora...    31   6.6  
UniRef50_Q7RM00 Cluster: Similar to sentrin/SUMO-specific protea...    31   6.6  
UniRef50_A0EGE4 Cluster: Chromosome undetermined scaffold_95, wh...    31   6.6  
UniRef50_Q4ZB64 Cluster: ORF014; n=5; unclassified Siphoviridae|...    30   8.8  
UniRef50_Q4H354 Cluster: Transcription factor protein; n=1; Cion...    30   8.8  

>UniRef50_A0NEK0 Cluster: ENSANGP00000029839; n=1; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000029839 - Anopheles gambiae
           str. PEST
          Length = 464

 Score = 35.5 bits (78), Expect = 0.23
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 213 YKFGNSRYGSESSPAAIFRLAKLRRLYCNERFSGQLHSVN 94
           Y  G SR     SP  + R+ ++RRL  N+R   ++H++N
Sbjct: 140 YAMGKSRITRNRSPTQVMRIKRVRRLKANDRERNRMHTLN 179


>UniRef50_Q16H62 Cluster: Target of poxn; n=2; Aedes aegypti|Rep:
           Target of poxn - Aedes aegypti (Yellowfever mosquito)
          Length = 374

 Score = 33.5 bits (73), Expect = 0.94
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 213 YKFGNSRYGSESSPAAIFRLAKLRRLYCNERFSGQLHSVN 94
           Y  G SR     SP  + ++ + RRL  N+R   ++H++N
Sbjct: 106 YAMGKSRITRNRSPTQVVKIKRFRRLKANDRERNRMHTLN 145


>UniRef50_UPI0000D56026 Cluster: PREDICTED: similar to CG7659-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG7659-PA - Tribolium castaneum
          Length = 245

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
 Frame = -2

Query: 195 RYGSES---SPAAIFRLAKLRRLYCNERFSGQLHSVN-FVSRCARIVKFHSHQFFITRLK 28
           RYG  +   SP+ I R+ ++RRL  N+R   ++H +N  + R   ++        +T+++
Sbjct: 79  RYGRATRCKSPSQILRIKRVRRLKANDRERNRMHMLNEALDRLRCVLPTFPEDTKLTKIE 138

Query: 27  KYNFKKQY 4
              F   Y
Sbjct: 139 TLRFAHSY 146


>UniRef50_O16867 Cluster: Basic helix-loop-helix neural
           transcription factor TAP; n=2; Sophophora|Rep: Basic
           helix-loop-helix neural transcription factor TAP -
           Drosophila melanogaster (Fruit fly)
          Length = 398

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -2

Query: 213 YKFGNSRYGSESSPAAIFRLAKLRRLYCNERFSGQLHSVN 94
           Y  G +R     SP  + ++ + RR+  N+R   ++H++N
Sbjct: 132 YAVGKNRVTRSRSPTQVVKIKRFRRMKANDRERNRMHNLN 171


>UniRef50_A0V8H4 Cluster: Phage integrase; n=1; Delftia acidovorans
           SPH-1|Rep: Phage integrase - Delftia acidovorans SPH-1
          Length = 333

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -2

Query: 210 KFGNSRYGSESSPAAIFRLAKLRRLYCNERFSGQLHSVNFVSRCARIV 67
           K G SRYG E +PA I   A++R L    R++ + H        AR++
Sbjct: 115 KSGKSRYGKEMAPATI--RARIRYLVAACRYAWKYHGFGTADPGARVI 160


>UniRef50_Q7RM00 Cluster: Similar to sentrin/SUMO-specific protease;
           n=4; Plasmodium (Vinckeia)|Rep: Similar to
           sentrin/SUMO-specific protease - Plasmodium yoelii
           yoelii
          Length = 1047

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
 Frame = -2

Query: 243 AYLTSLFLTSYKFGNSRYGSESSPAAIFRLA-KLRRLYCNERFSGQLHSVNFVS--RCAR 73
           A    +F+      N+R  +++  +  FRL  K  + Y  +  +   +S++ +S  RC+ 
Sbjct: 83  AVKNKIFINDIIEENNRKHNKNIVSDKFRLIDKKSKKYKEKGLNRNKYSISVISNDRCSS 142

Query: 72  IVKFHSHQFFITRLKKYNFKKQY 4
           I   H ++ FI+   K N+K++Y
Sbjct: 143 IDAHHKNKSFISNKIKENYKQKY 165


>UniRef50_A0EGE4 Cluster: Chromosome undetermined scaffold_95, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_95,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1980

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -2

Query: 231 SLFLTSYKFGNSRYGSESSPAAIFRLAKLRRLYCNERFSGQLHSVNFVSRCARIVKFHSH 52
           +LFL   K G +  G    P   F  + L  L+ NE+ S +L     +++ AR+ +F+  
Sbjct: 188 TLFLGQLKDGQNFLGISHEPQKTFSSSHLTILFNNEQQSSKLFEFPRLNQNARVARFNIC 247

Query: 51  QFF 43
           Q F
Sbjct: 248 QNF 250


>UniRef50_Q4ZB64 Cluster: ORF014; n=5; unclassified
           Siphoviridae|Rep: ORF014 - Staphylococcus phage 55
          Length = 273

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
 Frame = +2

Query: 83  RDTKLTE*SCPLNRSLQYNR-----RNLASLNIAAGELSEPYRELPNLYDVKK-RDVKYA 244
           RD+  TE    L++ L+ ++     +NL+S N A     E + E   LYD KK + + + 
Sbjct: 138 RDSHATEEDKELDKELERDKEKDIDKNLSSNNSATDVTHEQFEEWWKLYDKKKDKKMSFT 197

Query: 245 CLRSCL 262
             +SCL
Sbjct: 198 KFKSCL 203


>UniRef50_Q4H354 Cluster: Transcription factor protein; n=1; Ciona
           intestinalis|Rep: Transcription factor protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 409

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = -2

Query: 183 ESSPAAIFRLAKLRRLYCNERFSGQLHSVN-FVSRCARIVKFHSHQFFITRLKKYNFKKQ 7
           E SP  I +L K+RR   N+R   ++H +N  +     ++  +  +  +T+++   F   
Sbjct: 97  ERSPVTINKLKKIRRSKANDRERNRMHGLNDALEELRHVLPTYPDETKLTKIETLRFAYN 156

Query: 6   Y 4
           Y
Sbjct: 157 Y 157


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,539,560
Number of Sequences: 1657284
Number of extensions: 4101178
Number of successful extensions: 10086
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10085
length of database: 575,637,011
effective HSP length: 79
effective length of database: 444,711,575
effective search space used: 10228366225
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)