Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1112
(310 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyc... 29 0.16
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces... 25 1.9
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 1.9
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 25 1.9
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom... 25 1.9
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 3.4
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 24 4.5
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 4.5
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 24 5.9
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 23 7.9
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 23 7.9
>SPCC16C4.06c |||tRNA pseudouridylate synthase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 413
Score = 29.1 bits (62), Expect = 0.16
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +2
Query: 68 TMRAHRDTKLTE*SCPLNRSLQYNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYAC 247
T+ A+ K +E + P+N +L + NL+ + A LSEP+R L K +K+AC
Sbjct: 170 TLEAYVIAKASEKAFPINETLSH-LANLSKQDCVANSLSEPFR----LSKPKLDFLKHAC 224
>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 143
Score = 25.4 bits (53), Expect = 1.9
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 184 RTVPRITEFIRCQEKGCQICVFE 252
R P+ E + C + GC ICV++
Sbjct: 53 RVPPKPEEPLNCCQSGCAICVWD 75
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.4 bits (53), Expect = 1.9
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +2
Query: 95 LTE*SCPLNRSLQYNRRNLASLNIAAGELSEPYRELPNLYDV 220
L + S P+ R+ + L +L+ + G + +PY E P+L D+
Sbjct: 696 LQDQSSPIRRAAAL--KALGNLSSSTGYVIDPYIEFPSLLDI 735
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 25.4 bits (53), Expect = 1.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = -2
Query: 258 QLLKHAYLTSLFLTSYKFGNSRYGSESSP 172
QLL + S Y N RYGSE P
Sbjct: 83 QLLVTKWFASTLKNQYAARNERYGSEKKP 111
>SPAC959.03c |||U3 snoRNP-associated protein
Utp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 520
Score = 25.4 bits (53), Expect = 1.9
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 117 SGQLHSVNFVSRCARIVK-FHSHQFFITRLKKY 22
+G+L + + R VK FH+HQ+F KKY
Sbjct: 132 TGKLLTELHLRETVRDVKWFHNHQYFAVAQKKY 164
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 3.4
Identities = 14/54 (25%), Positives = 20/54 (37%)
Frame = +2
Query: 113 PLNRSLQYNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLRSCLIDFF 274
P N R +AS + + YR+LPN Y+ + L D F
Sbjct: 75 PPQHPASINSRRVASYTVQSSPSRTTYRQLPNEPQNSAAYTTYSSFPNALFDDF 128
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 24.2 bits (50), Expect = 4.5
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = -2
Query: 135 YCNERFSGQLHSVNFVSRCARIVKFHSHQFFITRLKKYNF 16
YC RFS + ++ RI H F +K NF
Sbjct: 101 YCGRRFSPKTVAMIAKQMITRIQSVHERHFIYRDIKPDNF 140
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 24.2 bits (50), Expect = 4.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 176 HLRLYSDSPSYVGCIVMSD 120
H+R+ +D PSYV +SD
Sbjct: 3364 HMRIIADKPSYVTMQTISD 3382
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 23.8 bits (49), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 255 LLKHAYLTSLFLTSYKFGNSRYGSES 178
LL +LTSLF Y F ++RY + S
Sbjct: 341 LLTGPFLTSLFTQFYLFMSTRYLARS 366
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 23.4 bits (48), Expect = 7.9
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -2
Query: 249 KHAYLTSLFLTSYKFGNSRYGSESSPAAIFRLAKLRRLYCNE 124
KH +LT++ ++Y + + ES+ + + KL+R + E
Sbjct: 459 KHPFLTTIGSSNYTSRSQQLDLESTLVVMTQNEKLKRKFSTE 500
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 23.4 bits (48), Expect = 7.9
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +2
Query: 146 NLASLNIA-AGELSEPYRELPNLYDVKKRDVKY 241
NLA+L A +GE EP + ++ D+K+ D Y
Sbjct: 632 NLAALVPAYSGESKEPNKADSSVVDIKQSDSSY 664
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,111,084
Number of Sequences: 5004
Number of extensions: 19623
Number of successful extensions: 36
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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