Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1112
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1129 + 34732007-34732091,34732814-34732934,34733012-347330...    29   0.98 
08_01_0002 - 20208-20594,21525-21671,21754-21917,22005-22162,245...    26   6.9  
06_02_0251 - 13478902-13478952,13478989-13479055,13479168-134793...    26   6.9  
11_01_0671 - 5479240-5479286,5480399-5480588,5480669-5480824,548...    25   9.2  

>01_06_1129 +
           34732007-34732091,34732814-34732934,34733012-34733083,
           34733168-34733242,34733348-34733419,34733514-34733675,
           34733780-34733854,34733932-34734003,34734089-34734160,
           34734245-34734313,34734388-34734462,34734557-34734628,
           34734732-34734866,34734946-34735415,34735490-34735648,
           34735741-34735880,34735974-34736193,34736305-34736540,
           34736627-34737130
          Length = 961

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
 Frame = -2

Query: 207 FGNSRYGSESSPAAIFRLAKLRRL-YCNERFSGQLHSVNFVSRCARIVKFHSHQFF 43
           F +S + + + P+A+F   +L+++      FSG+L+  + +S   R+V   ++Q F
Sbjct: 318 FMDSDHLTGTIPSALFSFPQLQQISLAKNSFSGELNMSSNISSLLRVVNLTNNQIF 373


>08_01_0002 -
           20208-20594,21525-21671,21754-21917,22005-22162,
           24533-24826,24916-25121,25216-25812,26366-27097
          Length = 894

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -2

Query: 252 LKHAYLTSLFLTSYKFGNSRYGSESSPAAIFRLAKLRRLYCNE 124
           ++H     +F  ++  G   YG   SP A+F    +RR +  +
Sbjct: 147 VRHLLSLRIFAHAHGHGAPLYGLMPSPDAVFACVSIRRAFLRD 189


>06_02_0251 -
           13478902-13478952,13478989-13479055,13479168-13479379,
           13480144-13481540,13481574-13482432,13482537-13482836
          Length = 961

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 201 NSRYGSESSPAAIFRLAKLRRLYCNERFSGQLHSVNFVS 85
           N+ Y  E   + I R  KL +  CN++ +   H V  VS
Sbjct: 700 NTSYNEEPEESIIKRKIKLHQEMCNDKDAQTKHKVEGVS 738


>11_01_0671 -
           5479240-5479286,5480399-5480588,5480669-5480824,
           5481005-5481931
          Length = 439

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 192 YGSESSPAAIFRLAKLRRLYCNERFSGQLHSVNFVS 85
           Y +   PAAI +  K+ +++C E   G   +V F+S
Sbjct: 373 YSALVKPAAISKHLKVVKVHCKEVDEGVCETVKFLS 408


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,307,116
Number of Sequences: 37544
Number of extensions: 103116
Number of successful extensions: 295
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 295
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)