Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1112
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)                      30   0.33 
SB_40237| Best HMM Match : TPR_2 (HMM E-Value=0.00034)                 27   2.4  
SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.4  
SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)                    27   3.1  
SB_19100| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  
SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)                25   9.5  

>SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)
          Length = 371

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 167 LYSDSPSYVGCIVMSDLVDNFILLILCHGARAS*NFTLINFS 42
           +YS  PSY+  IV+  L  ++IL I+ +G   S   T++ +S
Sbjct: 195 VYSLKPSYILTIVVYGLTPSYILTIIVYGLTPSYILTIVVYS 236



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -3

Query: 167 LYSDSPSYVGCIVMSDLVDNFILLILCHGARAS*NFTLI 51
           +YS  PSY+  IV+  L  ++IL I+ +G   S   T+I
Sbjct: 234 VYSLKPSYILTIVVYGLTPSYILTIVVYGLTPSYILTII 272



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 167 LYSDSPSYVGCIVMSDLVDNFILLILCHGARAS 69
           +YS  PSY+  IV+  L  ++IL I+ +G   S
Sbjct: 286 VYSLKPSYILTIVVYGLTPSYILTIVVYGLTPS 318


>SB_40237| Best HMM Match : TPR_2 (HMM E-Value=0.00034)
          Length = 466

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +2

Query: 122 RSLQYNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLRSCLI 265
           +S +Y   NLA+L+   G   E    L    ++ +    + CL  CLI
Sbjct: 208 QSFRYAAMNLAALHSRLGHRKEALLALQEAINMAQEKDDHVCLEHCLI 255


>SB_1431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1748

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +1

Query: 151  GESEYSRR*TFRTVPRITEFIRCQEKGCQICVFEELFNRF 270
            G ++Y+R     TV  +   I   EK C +CV + L  R+
Sbjct: 1671 GRTKYTRTHHVLTVDHVLGMIADAEKKCTLCVTQLLLQRY 1710


>SB_8719| Best HMM Match : SEA (HMM E-Value=4.7e-11)
          Length = 905

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 1   KILFFEVILFKARY--EKLMRVKFYDARAP*HKINRMKLSTK 120
           K++F+    +K  +      +V FYD+ A  HK N++K  TK
Sbjct: 814 KLVFYGFFAYKVVFYDSYAYKVVFYDSYAYEHKYNKLKKRTK 855


>SB_19100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 81 CARIVKFHSHQFFITRLKKYNFKKQYF 1
          C R +++  H F  ++++ Y F KQ F
Sbjct: 18 CHRRIRYGFHNFSWSKIQNYQFSKQVF 44


>SB_59447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1094

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 116 LNRSLQYNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLRSCL 262
           L    +++  ++   ++    + +  + LP L DVKKRDVK   +R  L
Sbjct: 109 LTPHFEFDLGDVMQRDVKPSPIRDHEKPLPVLGDVKKRDVKPTPIRDNL 157


>SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 183 ESSPAAIFRLAKLRRLYCNERFSGQLHSVNFVSRCAR 73
           ESS   I   A+LRRL  N+R   ++ S+N      R
Sbjct: 49  ESSKHKITAEARLRRLRANDRERRRIQSINVALEALR 85


>SB_21285| Best HMM Match : EGF_CA (HMM E-Value=1.3e-37)
          Length = 517

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = -2

Query: 132 CNERFSGQLHSVNFVSRCARIV-KFHSHQFFITRLKKYN 19
           CN  F+G  +  N V  CA  +   H+H   I  +  +N
Sbjct: 326 CNVGFTGDGYECNDVDECAHALHNCHTHAICINTVGSFN 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,849,796
Number of Sequences: 59808
Number of extensions: 134494
Number of successful extensions: 289
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 389827759
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)