Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1112
(310 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC036722-1|AAH36722.1| 261|Homo sapiens leucine rich repeat con... 29 2.1
AY358137-1|AAQ88504.1| 255|Homo sapiens VKGE9338 protein. 29 2.1
X98296-1|CAA66942.1| 2547|Homo sapiens ubiquitin hydrolase protein. 29 3.7
AL391259-2|CAD13527.2| 2547|Homo sapiens ubiquitin specific pept... 29 3.7
AL109797-1|CAD18900.2| 2547|Homo sapiens ubiquitin specific pept... 29 3.7
Y13619-1|CAA73941.1| 2070|Homo sapiens DFFRY protein. 28 4.8
Y13618-1|CAA73940.1| 2555|Homo sapiens DFFRY protein. 28 4.8
AF000986-1|AAC51833.1| 2555|Homo sapiens ubiquitin specific prot... 28 4.8
BC034243-1|AAH34243.1| 675|Homo sapiens Similar to anaphase pro... 28 6.4
BC006301-1|AAH06301.1| 755|Homo sapiens anaphase promoting comp... 28 6.4
BC001950-1|AAH01950.1| 755|Homo sapiens anaphase promoting comp... 28 6.4
BC001081-1|AAH01081.1| 755|Homo sapiens anaphase promoting comp... 28 6.4
AF191339-1|AAF05753.1| 755|Homo sapiens anaphase-promoting comp... 28 6.4
X95486-1|CAA64752.1| 1640|Homo sapiens clathrin heavy chain poly... 27 8.5
U60803-1|AAB40909.1| 1569|Homo sapiens clathrin heavy chain 2 pr... 27 8.5
U60802-1|AAB40908.1| 1626|Homo sapiens clathrin heavy chain 2 pr... 27 8.5
U41763-1|AAC50494.1| 1640|Homo sapiens muscle clathrin heavy cha... 27 8.5
AB065549-1|BAC05792.1| 283|Homo sapiens seven transmembrane hel... 27 8.5
>BC036722-1|AAH36722.1| 261|Homo sapiens leucine rich repeat
containing 18 protein.
Length = 261
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 194 RELPNLYDVKKRDVKYACLRSC 259
R L NLY V+++D+ ACLR C
Sbjct: 193 RRLENLYVVEEKDLCAACLRKC 214
>AY358137-1|AAQ88504.1| 255|Homo sapiens VKGE9338 protein.
Length = 255
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 194 RELPNLYDVKKRDVKYACLRSC 259
R L NLY V+++D+ ACLR C
Sbjct: 193 RRLENLYVVEEKDLCAACLRKC 214
>X98296-1|CAA66942.1| 2547|Homo sapiens ubiquitin hydrolase protein.
Length = 2547
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -2
Query: 165 IFRLAKLRRLYCNERFSGQLHSVNFVSRCARIVKFHSHQ 49
IFRL + RL F+G+++++N V++ V +++H+
Sbjct: 326 IFRLKMILRLLQISSFNGKMNALNEVNKVISSVSYYTHR 364
>AL391259-2|CAD13527.2| 2547|Homo sapiens ubiquitin specific
peptidase 9, X-linked protein.
Length = 2547
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -2
Query: 165 IFRLAKLRRLYCNERFSGQLHSVNFVSRCARIVKFHSHQ 49
IFRL + RL F+G+++++N V++ V +++H+
Sbjct: 326 IFRLKMILRLLQISSFNGKMNALNEVNKVISSVSYYTHR 364
>AL109797-1|CAD18900.2| 2547|Homo sapiens ubiquitin specific
peptidase 9, X-linked protein.
Length = 2547
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = -2
Query: 165 IFRLAKLRRLYCNERFSGQLHSVNFVSRCARIVKFHSHQ 49
IFRL + RL F+G+++++N V++ V +++H+
Sbjct: 326 IFRLKMILRLLQISSFNGKMNALNEVNKVISSVSYYTHR 364
>Y13619-1|CAA73941.1| 2070|Homo sapiens DFFRY protein.
Length = 2070
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -2
Query: 165 IFRLAKLRRLYCNERFSGQLHSVNFVSRCARIVKFHSHQ 49
IFRL + RL F+G+++++N +++ V +++H+
Sbjct: 334 IFRLKMILRLLQISSFNGKMNALNEINKVISSVSYYTHR 372
>Y13618-1|CAA73940.1| 2555|Homo sapiens DFFRY protein.
Length = 2555
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -2
Query: 165 IFRLAKLRRLYCNERFSGQLHSVNFVSRCARIVKFHSHQ 49
IFRL + RL F+G+++++N +++ V +++H+
Sbjct: 334 IFRLKMILRLLQISSFNGKMNALNEINKVISSVSYYTHR 372
>AF000986-1|AAC51833.1| 2555|Homo sapiens ubiquitin specific
protease 9 protein.
Length = 2555
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = -2
Query: 165 IFRLAKLRRLYCNERFSGQLHSVNFVSRCARIVKFHSHQ 49
IFRL + RL F+G+++++N +++ V +++H+
Sbjct: 334 IFRLKMILRLLQISSFNGKMNALNEINKVISSVSYYTHR 372
>BC034243-1|AAH34243.1| 675|Homo sapiens Similar to anaphase
promoting complex subunit 5 protein.
Length = 675
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 122 RSLQYNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLRSCL 262
RSL+Y NLA+L+ G + L + + + CL+ CL
Sbjct: 218 RSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCL 264
>BC006301-1|AAH06301.1| 755|Homo sapiens anaphase promoting complex
subunit 5 protein.
Length = 755
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 122 RSLQYNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLRSCL 262
RSL+Y NLA+L+ G + L + + + CL+ CL
Sbjct: 298 RSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCL 344
>BC001950-1|AAH01950.1| 755|Homo sapiens anaphase promoting complex
subunit 5 protein.
Length = 755
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 122 RSLQYNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLRSCL 262
RSL+Y NLA+L+ G + L + + + CL+ CL
Sbjct: 298 RSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCL 344
>BC001081-1|AAH01081.1| 755|Homo sapiens anaphase promoting complex
subunit 5 protein.
Length = 755
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 122 RSLQYNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLRSCL 262
RSL+Y NLA+L+ G + L + + + CL+ CL
Sbjct: 298 RSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCL 344
>AF191339-1|AAF05753.1| 755|Homo sapiens anaphase-promoting complex
subunit 5 protein.
Length = 755
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 122 RSLQYNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLRSCL 262
RSL+Y NLA+L+ G + L + + + CL+ CL
Sbjct: 298 RSLRYAALNLAALHCRFGHYQQAELALQEAIRIAQESNDHVCLQHCL 344
>X95486-1|CAA64752.1| 1640|Homo sapiens clathrin heavy chain
polypeptide protein.
Length = 1640
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 134 YNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLR-SCLIDFF 274
Y+R ++A L AG L + +LYD+K+ V L L++FF
Sbjct: 608 YDRAHIAQLCEKAGLLQQALEHYTDLYDIKRAVVHTHLLNPEWLVNFF 655
>U60803-1|AAB40909.1| 1569|Homo sapiens clathrin heavy chain 2
protein.
Length = 1569
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 134 YNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLR-SCLIDFF 274
Y+R ++A L AG L + +LYD+K+ V L L++FF
Sbjct: 608 YDRAHIAQLCEKAGLLQQALEHYTDLYDIKRAVVHTHLLNPEWLVNFF 655
>U60802-1|AAB40908.1| 1626|Homo sapiens clathrin heavy chain 2
protein.
Length = 1626
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 134 YNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLR-SCLIDFF 274
Y+R ++A L AG L + +LYD+K+ V L L++FF
Sbjct: 608 YDRAHIAQLCEKAGLLQQALEHYTDLYDIKRAVVHTHLLNPEWLVNFF 655
>U41763-1|AAC50494.1| 1640|Homo sapiens muscle clathrin heavy chain
protein.
Length = 1640
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 134 YNRRNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLR-SCLIDFF 274
Y+R ++A L AG L + +LYD+K+ V L L++FF
Sbjct: 608 YDRAHIAQLCEKAGLLQQALEHYTDLYDIKRAVVHTHLLNPEWLVNFF 655
>AB065549-1|BAC05792.1| 283|Homo sapiens seven transmembrane helix
receptor protein.
Length = 283
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 203 PNLYDVKKRDVKYACLRSCL 262
P +Y ++ +DVKYA R CL
Sbjct: 259 PLIYSLRNKDVKYALKRRCL 278
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,010,207
Number of Sequences: 237096
Number of extensions: 534386
Number of successful extensions: 890
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1400773776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -