Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1112
         (310 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101305-2|AAF98594.2|  259|Caenorhabditis elegans Uncoordinated...    28   1.2  
U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    27   2.7  
U41028-1|AAA82354.1|  532|Caenorhabditis elegans Hypothetical pr...    25   8.1  

>AF101305-2|AAF98594.2|  259|Caenorhabditis elegans Uncoordinated
           protein 46 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 210 KFGNSRYGSESSPAAIFRLAKLRRLY-CNERFSGQLHSVNF 91
           KF  S    ES  +++   A L + Y C +R +  LHSVNF
Sbjct: 134 KFAGSSAVFESDNSSVIFSAPLTQKYVCEDRINVTLHSVNF 174


>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -2

Query: 132 CNERFSGQLHSVNFVSRCARIVKFHSHQFFITRLKKYNFKKQ 7
           C++  S  L SV  VS C      +S Q F  R+   NFK Q
Sbjct: 19  CSQVSSRALRSVRCVSPCGSYSSGNSKQSFQFRISANNFKFQ 60


>U41028-1|AAA82354.1|  532|Caenorhabditis elegans Hypothetical
           protein C25G6.3 protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -2

Query: 258 QLLKHAYLTSLFLTSYKFGNSRYGSESSPAAIFRLAK 148
           QLLK         TS KFG S + + SS   + +LAK
Sbjct: 470 QLLKEYIGNKELNTSRKFGKSWFKTGSSTEKVLKLAK 506


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,990,637
Number of Sequences: 27780
Number of extensions: 105358
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)