Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1112
         (310 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21170.1 68416.m02674 F-box family protein contains Pfam prof...    27   3.4  
At1g33670.1 68414.m04165 leucine-rich repeat family protein cont...    27   3.4  
At1g02570.1 68414.m00208 expressed protein                             26   4.5  
At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase famil...    26   5.9  

>At3g21170.1 68416.m02674 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 394

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 237 LTSLFLTSYKFGNSRYGSESSPAAIFRLA 151
           ++  FL S+ F   R+GSES P     LA
Sbjct: 233 ISEQFLLSFDFSTERFGSESLPEGDSHLA 261


>At1g33670.1 68414.m04165 leucine-rich repeat family protein
           contains leucine rich-repeat domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to receptor kinase-like
           protein GB:AAB82755 GI:2586083 from [Oryza
           longistaminata] (Science 270 (5243), 1804-1806 (1995))
          Length = 455

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 222 LTSYKFGNSRYGSESSPAAIFRLAKLRRLYC-NERFSGQL 106
           L   +  N R  + S P  +F+L KLR +Y  N R SG L
Sbjct: 105 LNEIRLTNLRKITGSFPHFLFKLPKLRTVYLENNRLSGPL 144


>At1g02570.1 68414.m00208 expressed protein
          Length = 431

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 190 VPRITEFIRCQEKGCQICVFEELFN 264
           V  +T  I+   KGC+ CVF+++ N
Sbjct: 403 VNTLTLSIKRSRKGCESCVFDDMCN 427


>At1g27980.1 68414.m03427 pyridoxal-dependent decarboxylase family
           protein similar to sphingosine-1-phosphate lyase [Homo
           sapiens] GI:10129683; contains Pfam profile PF00282:
           Pyridoxal-dependent decarboxylase conserved domain
          Length = 544

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 143 RNLASLNIAAGELSEPYRELPNLYDVKKRDVKYACLRSCLIDFFQID 283
           +N + +  A+  L E  RE+  L+ + K D+      S  +D F+++
Sbjct: 414 QNTSKIMEASKRLEEGVREIHELFVIGKPDMTIVAFGSKALDIFEVN 460


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,428,844
Number of Sequences: 28952
Number of extensions: 92089
Number of successful extensions: 251
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)