Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1111
         (577 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8T079 Cluster: LD22344p; n=2; Sophophora|Rep: LD22344p...    34   2.8  
UniRef50_Q5E8I0 Cluster: Putative uncharacterized protein; n=1; ...    33   4.8  
UniRef50_Q7Q178 Cluster: ENSANGP00000013315; n=2; Anopheles gamb...    33   4.8  
UniRef50_A5CTN8 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_Q5CTS9 Cluster: Putative uncharacterized protein; n=2; ...    32   8.4  

>UniRef50_Q8T079 Cluster: LD22344p; n=2; Sophophora|Rep: LD22344p -
           Drosophila melanogaster (Fruit fly)
          Length = 602

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +2

Query: 218 CFPLFKINIFFCINLVTTCKSNLIDQGVLRISIIG 322
           CF     N FF  N+   CK NLI Q +L +S++G
Sbjct: 465 CFKTIAKNTFFLGNIGNACKVNLILQTILGVSLVG 499


>UniRef50_Q5E8I0 Cluster: Putative uncharacterized protein; n=1;
           Vibrio fischeri ES114|Rep: Putative uncharacterized
           protein - Vibrio fischeri (strain ATCC 700601 / ES114)
          Length = 439

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
 Frame = -2

Query: 492 NLNRFENVSLNILIPNSMKYY--FNTKIKYVRLNL*AVIFMNT*QLLSI*NAHFSNISVP 319
           N++ +  V++   I NS+ +   FN K ++V +     +++    L ++ N  FSN+   
Sbjct: 110 NIDDYTFVNIGDFI-NSLHFCRRFNNKFRFVNIFQLIFLYLRASSLNNVLNELFSNVKCN 168

Query: 318 IIEILNTP*SIKLLLHVVTRLMQKKMLILNRGKQTKNIDNIVCKQFVTWSR 166
            I + N    +  L+   +R+   K  +L  G  TK         ++ W R
Sbjct: 169 NIILTNDTLGLSNLIVQNSRVFNIKNYVLQHGLPTKFYFPTSADNYIVWGR 219


>UniRef50_Q7Q178 Cluster: ENSANGP00000013315; n=2; Anopheles gambiae
           str. PEST|Rep: ENSANGP00000013315 - Anopheles gambiae
           str. PEST
          Length = 846

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 15/67 (22%), Positives = 32/67 (47%)
 Frame = +2

Query: 14  ESKSTSPARGAPCRSTNEALAETWSRVGTSTDARQI*ADKIM*FQHWQHLDRDHVTNCLH 193
           E K+++P    PC S++ + + +   +  + D     +D         +  R HV + +H
Sbjct: 750 EKKASTPPSSGPCSSSSSSSSSSGDSMAANPDKSTRLSDSAQRMDCTVYSHRPHVNHAIH 809

Query: 194 TILSMFF 214
           T+++M F
Sbjct: 810 TMMTMGF 816


>UniRef50_A5CTN8 Cluster: Putative uncharacterized protein; n=1;
           Clavibacter michiganensis subsp. michiganensis NCPPB
           382|Rep: Putative uncharacterized protein - Clavibacter
           michiganensis subsp. michiganensis (strain NCPPB 382)
          Length = 106

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 171 SRSRCCQCWNYIILSAYICLASVL 100
           SRSR  + W Y+IL  ++CL SVL
Sbjct: 5   SRSRGRETWGYVILGLFLCLTSVL 28


>UniRef50_Q5CTS9 Cluster: Putative uncharacterized protein; n=2;
           Cryptosporidium|Rep: Putative uncharacterized protein -
           Cryptosporidium parvum Iowa II
          Length = 1167

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = -2

Query: 216 TKNID-NIVCKQFVTWSRSRCCQCWNYIILSAYICLASV 103
           +KNI+ NIV KQ +   R + C  W + IL++Y CLA +
Sbjct: 482 SKNIELNIVYKQLMGIFRFKLCYVWKFSILNSY-CLAII 519


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 484,129,975
Number of Sequences: 1657284
Number of extensions: 9188047
Number of successful extensions: 23269
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23257
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)